RNA id: TU254488


Basic Information

Item Value
RNA id TU254488
length 579
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G214946
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21442889 ~ 21462351 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTACATGGAAAGCTTTATGGACGCTGATTTCTGGACTGTGTCTGGATTTCACACATGGATCCTCTAAATACTGccaagtctccagtgtcacaaAACTCATCACATAATGTCTTGAGTGGACTGATTTAATAACAGAAGTGAATAATGAACTTAATCATTATTAAGAGTCATCCATAAATAAGAAATGGATCATGTTTGTTTTAGGTAACAAAAAGCAACAGCTCACAACAGACATTTTTTCAACCtccacacatataaatataaatctaagtTTAAGTGTAAGAGTctacaaaaatgatttttacaaAAGCATGACTTTAACAGCAGCATTTAAGCATTGCAGTAttttagaatattaaaaaataaagctaaagAGAAACAACTCTAAAAAGTAGCACTTGGTTCATCAAGGAATCATCAGGCTGGTTTAGTTTTTGAAAAGAAGATGTGGATTGAGgaataaaatttgttttctcTGTTACCCATCTGTTATTGATGCTTATACATTTCTGCTGGTTCAGGGTGGATGGGTTGCTGGCAGGGAGGAGAGCAATCGTGGACTGCTTCTTCTGTTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579357.1 lncRNA downstream 5962 21435653 ~ 21436927 (-) True LOC117598824
TU254479 lncRNA downstream 17475 21406870 ~ 21425414 (-) False G214941
TU254478 lncRNA downstream 26459 21406870 ~ 21416430 (-) True G214941
TU254470 lncRNA downstream 82990 21359697 ~ 21359899 (-) True G214933
TU254466 lncRNA downstream 86015 21354006 ~ 21356874 (-) False LOC113528016
TU254504 lncRNA upstream 2022 21464373 ~ 21464803 (-) True G214956
TU254484 lncRNA upstream 22889 21485240 ~ 21492497 (-) True LOC113540570
XR_004579356.1 lncRNA upstream 29924 21492275 ~ 21495618 (-) False LOC113540570
XR_004579355.1 lncRNA upstream 29924 21492275 ~ 21493450 (-) False LOC113540570
XR_004579353.1 lncRNA upstream 34078 21496429 ~ 21497974 (-) True LOC117598822
XM_034309841.1 mRNA downstream 62673 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 75777 21360562 ~ 21367112 (-) True arl9
XM_026916544.2 mRNA downstream 75780 21360562 ~ 21367109 (-) False arl9
XM_026916242.2 mRNA downstream 83699 21352281 ~ 21359190 (-) True LOC113528016
XM_026936343.2 mRNA upstream 123747 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA upstream 123747 21586098 ~ 21613875 (-) True b4galt1l
XM_034309813.1 mRNA upstream 864375 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 937334 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 1090373 22552724 ~ 22582102 (-) True topaz1
TU254170 other downstream 415630 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1029959 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1379399 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 1994555 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2366549 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 209811 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 210471 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 213287 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 213920 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 221673 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile