RNA id: TU254563


Basic Information

Item Value
RNA id TU254563
length 498
RNA type TUCP
GC content 0.45
exon number 3
gene id G214998
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22039652 ~ 22064997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catgatttaaatatattttaaatacattctcctcccatcatcagcagataagcaaatccaagcgtcagggctggatatcactctatttatgtgatgtgatggtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggttatgaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagTTATGGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaCGCATTGATAGCAGTGGGAGTACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaacAGAcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254600 lncRNA upstream 18917 22015818 ~ 22020735 (+) True G215035
TU254643 lncRNA upstream 44587 21916419 ~ 21995065 (+) True G215069
TU254659 lncRNA upstream 73419 21923978 ~ 21966233 (+) True G215075
TU254658 lncRNA upstream 104635 21923978 ~ 21935017 (+) False G215075
XR_004579405.1 lncRNA upstream 126303 21912612 ~ 21913349 (+) True LOC117598970
TU254689 lncRNA downstream 12493 22077490 ~ 22133009 (+) True G215095
TU254702 lncRNA downstream 68205 22133202 ~ 22401320 (+) True G215107
XR_004579409.1 lncRNA downstream 72298 22137295 ~ 22139333 (+) True LOC117598974
TU254726 lncRNA downstream 195894 22260891 ~ 22282993 (+) True G215127
TU254755 lncRNA downstream 275224 22340221 ~ 22343637 (+) True G215149
XM_034309812.1 mRNA upstream 407746 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 475851 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 398157 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 472505 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 549862 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 668738 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 675943 22740940 ~ 22754432 (+) True rnf44
LOC117598942 other upstream 1741 22037335 ~ 22037911 (+) True LOC117598942
LOC117598799 other upstream 2406 22035678 ~ 22037246 (+) True LOC117598799
LOC117598798 other upstream 8023 22026714 ~ 22031629 (+) True LOC117598798
TU254652 other upstream 10357 21994585 ~ 22029295 (+) True G215073
LOC117598941 other upstream 19404 22019805 ~ 22020248 (+) True LOC117598941
LOC117598890 other downstream 3958 22068955 ~ 22069825 (+) True LOC117598890
LOC117598801 other downstream 8064 22073061 ~ 22073569 (+) True LOC117598801
TU254576 other downstream 10408 22075405 ~ 22087409 (+) True LOC117598965
TU254570 other downstream 11249 22076246 ~ 22110810 (+) True G215005
LOC117598856 other downstream 11286 22076283 ~ 22076828 (+) True LOC117598856

Expression Profile