RNA id: TU254575


Basic Information

Item Value
RNA id TU254575
length 380
RNA type TUCP
GC content 0.48
exon number 3
gene id G215010
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21664558 ~ 21711769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTCTCATATTCAGTTACGAGTGATGGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaGCTATCTATTACAATGGGGTTACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaggagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254607 lncRNA upstream 7723 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 29484 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 47264 21617095 ~ 21617294 (+) True G214825
TU254247 lncRNA upstream 99182 21557990 ~ 21565376 (+) True LOC113540569
TU254249 lncRNA upstream 108157 21551549 ~ 21556401 (+) True G214747
TU254625 lncRNA downstream 5923 21717692 ~ 21718076 (+) True G215055
TU254629 lncRNA downstream 12842 21724611 ~ 22137078 (+) True G215059
TU254636 lncRNA downstream 62454 21774223 ~ 21807343 (+) True G215064
XR_004579408.1 lncRNA downstream 176262 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 200843 21912612 ~ 21913349 (+) True LOC117598970
XM_034309812.1 mRNA upstream 32652 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 100757 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 751385 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 825733 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 903090 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1021966 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 1029171 22740940 ~ 22754432 (+) True rnf44
LOC117598848 other upstream 1018 21663095 ~ 21663540 (+) True LOC117598848
LOC117599000 other upstream 3519 21660425 ~ 21661039 (+) True LOC117599000
LOC117598992 other upstream 5451 21658502 ~ 21659107 (+) True LOC117598992
TU254580 other upstream 15406 21646080 ~ 21649152 (+) True G215015
LOC117598748 other upstream 16755 21647236 ~ 21647803 (+) True LOC117598748
LOC117598875 other downstream 2160 21713929 ~ 21714624 (+) True LOC117598875
LOC117598966 other downstream 8864 21720633 ~ 21721061 (+) True LOC117598966
LOC117598855 other downstream 14693 21726462 ~ 21727321 (+) True LOC117598855
LOC117598777 other downstream 18634 21730403 ~ 21731069 (+) True LOC117598777
LOC117598939 other downstream 111900 21823669 ~ 21824112 (+) True LOC117598939

Expression Profile