RNA id: TU254580


Basic Information

Item Value
RNA id TU254580
length 2903
RNA type TUCP
GC content 0.38
exon number 3
gene id G215015
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21646080 ~ 21649152 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacacacaccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgatgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCATTAACTGATAGCAGCTACTGGACACATTGGATaggacaacctgcaggaaaaacactggagtataTCGGACAAATATCTGGTGGTGGTAGCACGTACtacagtgagaaactgaaaagcaggtttcaggtttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtgaaccacagtgagacagatcaacaacatccctgtacaaaaacacctCATACAGTGCAAATTATAACAgaatgtccacaagacacaacACTTATCTATCCAAgtctaaccaaaaaaaaaaattaatctcaTAAATGACAAGAAAGAGATGCaagttagttatttttataaaatactttGTAGTGTAGATTTTAAACCATAATGCTATATCTCTAACATTTctgcacattatacacactattATAATTAGACGACTAACAAGAACTTGTTATACTGCAGTATCTTTGGCTAACAATAATTATGTCAACAAATTAGACTTTGTGACAAAGTATGAGAGCATTTTGTCATGACTTTTAAGAGAGGTAGAATTCTTCCATTATCATGATCCCAATATCCTCAAGCATAGATAATAATTATCATGCTAAATgtagtatttaatatttgttgTGAATTTCACTgacacttttatattttattgaaaattataGTATTTCATAAAGAGGCTTCTGTTTGATTAAAAAGCCAAATATCCTCCATAAGATGAATCTCCTCCTTAtgatttaaatactttttaaatacattctcctcccatcatcagcagataagcaaatacaagcgtcagggctggatatcactctatttatgtgatgtgatggtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagtgtctctccatcccctgcaaGGTTTCATATTCACTTACGAGTGATGGCACAGCTTGGAcccgacaacctgcaggaaaagctctggagtggattggaTACATCAGATACGATGGGGGTACAGattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcaaggacagaatctgcaaactgaagacacagctgtgtattactgcgcagGAGgctcacagtgacacagaatagtggattccccttacaaaaactttgagaCATGTTAGAGACATCCTCTCAATGCCACTAAtaaacctctcacacacacttttactttcttcCACTGGATTCAAGTTTTAATAGTGTGtcattattaaacacacaatgtacttttttaaatcaaagaatTGCATAAATAGTATTTTTTCAAGAGTTTTAATTCAAAAcccttattaattaattttacagaaattttGAACAGCAGTTggaataaatgcttaaaataataaGCAGTTTTAACTGATTAACTAATCCCCACTTTACAGACACTTCAGCCCAAACATTtagatcatttaatcatttaacaaaaactaatacaaacGTTTACTCAGTTCATAGTTATTAAGAATATATTATTCATctttttagctgttttaaatgaagtgtACCTGAATGTCCAGTTAACATTCCACATGACAAGATTCTTGTCTTGGGATTGTCAACTGGAGGAACGCTGTCACAGGAAATCATTTCAGCAAAAAATACTAGTGCAGAGCAGATAAAGGTTGGGAGTAATTTTTCagtgggtaatttttttttactcagtgtGGTCTGATTAGAGAACTGACGACATATCTTGTTTTAAGTTTATGTTTAAAGGTAATTGAAGAGAGTATGATGCATGTATTTTACGCTTCAATATTGACGTGTCatatctgttcagagtccatggcTCTACTAACATGATAACGTGAAAcaccactatgaaacaaaacacttcaaatTCTCTTATTTATAgtgaagaattaaaaaaaaatacttgaatACACCTTGAAGCTATACAGTTAAATTGGTAACATGCTTTGAGCTACATGCCACGTATTATTCCTACCTGGTAGGCGGTGAGCAGCTTGCTCCTCCACTGGGCCTGTGGCAGGTCGTGGACGGAGAGGCGCAGGTTACGGTTGCTGTCTTTAAACGGGAGAACGTGTGGCTCGTCAATGAGGCGACCACCAAGCTGCGCCTCCATCTGCATCACCTCCTACAGAGacaacacaacagcaaacacagCCGAGTTTCAGGTACGGTCCACCACCGAGAGCTGTTTTCTAAATGTAGATGATCCATATTATTCAAGGACACACTGCTGTCTTAAAGCAACATAACTCctttgtgtagctgtgtgaAAAATGCttgtatgtataaaaaatatccACCACATTTACATGTGGTAATAAGCACTCTGGGTCTACATAAGTCAGTCAATGATcactttttgttaaaaatgaaagcaaaaaacatGATTCTACAATCTGAGGTTCCCGAGCTGCACCGAGTCGTCCTGATGATCCTGTAATAGTAACTCGCAGTCTGTCCTCTACTAAGAGTTAGAATTGGTTTGGGAATTTGCGCTAATACATCAAATGTCACAACCTTAGGCAGGAAAGAAGTCCGACTTGTGCTGCAGCAAATCAGGAGAGGAAGACAGTCAATAATAGAAAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254346 lncRNA upstream 11006 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 28786 21617095 ~ 21617294 (+) True G214825
TU254247 lncRNA upstream 80704 21557990 ~ 21565376 (+) True LOC113540569
TU254249 lncRNA upstream 89679 21551549 ~ 21556401 (+) True G214747
TU254327 lncRNA upstream 133040 21512571 ~ 21513040 (+) False LOC113540568
TU254607 lncRNA downstream 7109 21656261 ~ 21656835 (+) True G215042
TU254625 lncRNA downstream 68540 21717692 ~ 21718076 (+) True G215055
TU254629 lncRNA downstream 75459 21724611 ~ 22137078 (+) True G215059
TU254636 lncRNA downstream 125071 21774223 ~ 21807343 (+) True G215064
XR_004579408.1 lncRNA downstream 238879 21888031 ~ 21888800 (+) True LOC117598973
XM_034309812.1 mRNA upstream 14174 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 82279 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 814002 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 888350 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 965707 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1084583 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 1091788 22740940 ~ 22754432 (+) True rnf44
TU254301 other upstream 296994 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 297251 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 297251 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 297251 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 297251 21341566 ~ 21348829 (+) False hopx
LOC117598992 other downstream 9350 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 11273 21660425 ~ 21661039 (+) True LOC117599000
TU254587 other downstream 13932 21663084 ~ 22000809 (+) True G215022
LOC117598848 other downstream 13943 21663095 ~ 21663540 (+) True LOC117598848
TU254575 other downstream 15406 21664558 ~ 21711769 (+) True G215010

Expression Profile