RNA id: TU254625


Basic Information

Item Value
RNA id TU254625
length 288
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G215055
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21717692 ~ 21718076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCAGGTTCCACTCAAACCATGTTCTCTACATTTCTACTCCTGCTGTTAACAGCTGCATCTGGAATTAAATGTATTGAACTGGTTCAGCCTGCAGTCATGGTGGTTAAGCCTGGAGAATCATTTTCAGTCCCCTGTAAGATCACTGGCTACTCAGCCACAAGTTCCTGTACTAACTGGATACGACATGCATCAGGAAAGGAGTTGGAATGGATGGGCTGGTACTGCAGCTCCAGTAATACTGGCAGCAAAGATTCACTAAAGAACAAGATCCATTTCTCAGCCGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254607 lncRNA upstream 60857 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 82618 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 100398 21617095 ~ 21617294 (+) True G214825
TU254247 lncRNA upstream 152316 21557990 ~ 21565376 (+) True LOC113540569
TU254249 lncRNA upstream 161291 21551549 ~ 21556401 (+) True G214747
TU254629 lncRNA downstream 6535 21724611 ~ 22137078 (+) True G215059
TU254636 lncRNA downstream 56147 21774223 ~ 21807343 (+) True G215064
XR_004579408.1 lncRNA downstream 169955 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 194536 21912612 ~ 21913349 (+) True LOC117598970
TU254643 lncRNA downstream 198343 21916419 ~ 21995065 (+) True G215069
XM_034309812.1 mRNA upstream 85786 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 153891 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 745078 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 819426 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 896783 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1015659 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 1022864 22740940 ~ 22754432 (+) True rnf44
LOC117598875 other upstream 3068 21713929 ~ 21714624 (+) True LOC117598875
LOC117598918 other upstream 5914 21711315 ~ 21711778 (+) True LOC117598918
TU254575 other upstream 5923 21664558 ~ 21711769 (+) True G215010
LOC117598775 other upstream 48810 21668341 ~ 21668882 (+) True LOC117598775
LOC117598774 other upstream 51948 21664594 ~ 21665744 (+) True LOC117598774
LOC117598966 other downstream 2557 21720633 ~ 21721061 (+) True LOC117598966
LOC117598855 other downstream 8386 21726462 ~ 21727321 (+) True LOC117598855
LOC117598777 other downstream 12327 21730403 ~ 21731069 (+) True LOC117598777
LOC117598939 other downstream 105593 21823669 ~ 21824112 (+) True LOC117598939
LOC117598860 other downstream 111471 21829547 ~ 21830139 (+) True LOC117598860

Expression Profile