RNA id: XM_034309814.1


Basic Information

Item Value
RNA id XM_034309814.1
length 1709
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC113546930
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22463100 ~ 22490911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttctctacatctctactgcttgtgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTTTCATATTCAGATATGAGCTATAGTACACATTGGATCcaacaacctgcaggaaaagttCTGGAGTGGATTGGACAGATCAGTAGCAGTGGGGGTACAGcttacagtgacaaactgaaaaacaagttcagtatctccagagacactgctactaacacaataacaattatcccctgcaaggtttcatattcagttaccAGTGTTGGTACAGCTTGGATCcaacaacctgcaggaaaagctctggagtggattggaTACATCATTTATGATGGGGATACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacaaaatctgcaaactgaagacacagctgtgtattactgcgcagGAGcgtcacaAGGATCTGGAGTTAGTTTTGGAGACCACAACATGCACTGGATCAGACGACAGGCGAACAAACCACTGGTGTGGATGGGACGTGTTTGGTATAATGCAAATGGTCATGACTATGCAAAATCTTTTGAAGGGAGAACAGAAATCACCAGAGATAATTCCAACAGCATGGTGTATCTGAAACTCTCTGacagatataaatacaCTGCAAGTACACAGCAGTCTCTGTGTTTGGTCGAGTACAGCAGAGGAATCATGAGCTggcctcttcttcttctgatatCCTCTGTGTCCTATGTGCATGGCATCAGTCTGACCTCGTCTCCTGCTGAGGTTAAACCTCCCGGAGCCTCAGTGAAGTTGTCCTGTCAGATTTCTGGCTATGCCCTCACTAGCTACGGCACGGGCTGGATCAGGCAGCCTCCAGGAAAAGGCTTGGAGTGGATCGGGATCGTATGGGGTGGTGGAAGCATAGACTCTGGAGCTTCCTTTAAAACTCgcttcagcatctccagagacacaAGCAACAATGTGCTTTACTTAGATATCAGCAGCCTGGTGCCAGAAGACACGGCTGTTTATTATTGTGCAAAGACAGGGgagGACGACGCTTTTGACTACTGGGGAAAGGGAACGACGGTCACCGTTACTTCTgCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTTCGGCTCGGCCTCGGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCCAGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGGTATGCGACAAAAACCTGGAACACCCTTTTATGTGTCCTTtccaaacatgcaaacagtggCCACTTTAGTAGGTAACTACACCTGCCCCATACACACAGtatcagacaaacaaaaaatggtACTAaactttccttgtcactggggtggtgcCGTCAAGGGTACAGCTTTTTGTACCTTTTAGTCTGTATCTTTTACGAGGAAACGTGAATATAGTGCacgtttaaaaataatttatggtACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254759 lncRNA upstream 57630 22401950 ~ 22405524 (+) True G215153
TU254702 lncRNA upstream 61834 22133202 ~ 22401320 (+) True G215107
TU254755 lncRNA upstream 119517 22340221 ~ 22343637 (+) True G215149
TU254726 lncRNA upstream 180161 22260891 ~ 22282993 (+) True G215127
XR_004579409.1 lncRNA upstream 323821 22137295 ~ 22139333 (+) True LOC117598974
TU255084 lncRNA downstream 233776 22724687 ~ 22726646 (+) True G215294
TU255128 lncRNA downstream 244860 22735771 ~ 22735986 (+) True G215336
TU255136 lncRNA downstream 287705 22778616 ~ 22779241 (+) True G215343
TU255137 lncRNA downstream 289379 22780290 ~ 22780576 (+) True trnat-cgu_7
TU255085 lncRNA downstream 336110 22827021 ~ 22830832 (+) True G215295
XM_034309812.1 mRNA upstream 831248 21620631 ~ 21631906 (+) True rest
XM_034309843.1 mRNA upstream 899353 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA upstream 899353 21514573 ~ 21563801 (+) False LOC113540569
XM_026937154.2 mRNA upstream 917062 21541990 ~ 21546092 (+) True LOC113540583
XM_034309850.1 mRNA upstream 917062 21541990 ~ 21546092 (+) False LOC113540583
XM_034309815.1 mRNA downstream 46591 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 123948 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 242824 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 250029 22740940 ~ 22754432 (+) True rnf44
XM_034310061.1 mRNA downstream 250029 22740940 ~ 22754432 (+) False rnf44
LOC117598940 other upstream 65584 22397112 ~ 22397570 (+) True LOC117598940
LOC117598922 other upstream 72332 22390359 ~ 22390822 (+) True LOC117598922
LOC117598883 other upstream 75005 22387697 ~ 22388149 (+) True LOC117598883
LOC117598944 other upstream 80829 22381888 ~ 22382325 (+) True LOC117598944
LOC117598924 other upstream 83468 22379243 ~ 22379686 (+) True LOC117598924
LOC117598850 other downstream 4297 22495208 ~ 22535776 (+) True LOC117598850
LOC117595678 other downstream 9972 22500883 ~ 22501370 (+) True LOC117595678
TU255135 other downstream 274903 22765814 ~ 22769627 (+) False higd2a
trnat-cgu_7 other downstream 289375 22780286 ~ 22780357 (+) False trnat-cgu_7
TU255140 other downstream 344753 22835664 ~ 22835902 (+) True G215347

Expression Profile