RNA id: TU254830


Basic Information

Item Value
RNA id TU254830
length 447
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G215182
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21696660 ~ 22285703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtcagggctggatatcactctatttatgtgatgtgatggtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTTTCATATTCACTTCACGAGTGAAGAAACAGCTTGgatccgacaacctgcaggaaaagctctggagtggattggaATCATCTATAGTGGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtgacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254864 lncRNA downstream 20035 22236967 ~ 22240962 (-) False G215182
TU254889 lncRNA downstream 23486 22236967 ~ 22237511 (-) False G215182
TU254995 lncRNA downstream 63585 22164570 ~ 22197412 (-) True G215228
TU254781 lncRNA downstream 120857 22125672 ~ 22140140 (-) True G215172
TU254985 lncRNA downstream 124990 22080162 ~ 22136007 (-) True G215221
TU255019 lncRNA upstream 55712 22339042 ~ 22344517 (-) False LOC117598814
TU255027 lncRNA upstream 107026 22390356 ~ 22397751 (-) True G215249
TU255043 lncRNA upstream 162792 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA upstream 191691 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA upstream 194646 22477976 ~ 22480922 (-) True LOC117598972
XM_026936343.2 mRNA downstream 647122 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 647122 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 880781 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 893885 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 43396 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 116355 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 269394 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 270299 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 270300 22553630 ~ 22582102 (-) False topaz1
TU254899 other downstream 3747 22225641 ~ 22257250 (-) True G215184
LOC117598967 other downstream 6145 22254433 ~ 22254852 (-) True LOC117598967
LOC117598908 other downstream 10384 22250090 ~ 22250613 (-) True LOC117598908
TU254814 other downstream 13672 22230166 ~ 22247325 (-) False G215182
TU254853 other downstream 13672 22239216 ~ 22247325 (-) False G215182
LOC113546926 other upstream 29457 22312787 ~ 22313437 (-) False LOC113546926
TU255010 other upstream 29591 22312921 ~ 22313871 (-) True LOC113546926
LOC117598862 other upstream 36214 22319544 ~ 22320275 (-) True LOC117598862
XR_004579410.1 other upstream 37844 22321174 ~ 22321733 (-) True LOC117598975
TU255018 other upstream 55712 22339042 ~ 22364265 (-) False LOC117598814

Expression Profile