RNA id: TU254889


Basic Information

Item Value
RNA id TU254889
length 456
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G215182
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21696660 ~ 22285703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttcaacacacaccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgaactgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCGTTAACTGAGAACAACTACTGGACACACTGGATctgacaacctgcaggaaaagctctggagtggatcgGATACATCAATAAAGATGGGGGTACAtattacagtgacaaactgaaaaataagttcagcatctccagagacacggctactaacacaataacaattcaaggacagaatctgcaaactgaagacacagctgcgTATTACTGCGCAAgtcacacagtgacacagaatagtggattccccttacaaaaactttgagaCATGTTAGAGACATCCTCTCAATGCAACTAATAAATcatctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254995 lncRNA downstream 39555 22164570 ~ 22197412 (-) True G215228
TU254781 lncRNA downstream 96827 22125672 ~ 22140140 (-) True G215172
TU254985 lncRNA downstream 100960 22080162 ~ 22136007 (-) True G215221
TU254991 lncRNA downstream 103602 22121456 ~ 22133365 (-) True G215224
TU254780 lncRNA downstream 154124 22025483 ~ 22082843 (-) True G215171
TU254808 lncRNA upstream 16915 22254426 ~ 22283330 (-) False G215182
TU254830 lncRNA upstream 23486 22260997 ~ 22283330 (-) False G215182
TU255019 lncRNA upstream 101531 22339042 ~ 22344517 (-) False LOC117598814
TU255027 lncRNA upstream 152845 22390356 ~ 22397751 (-) True G215249
TU255043 lncRNA upstream 208611 22446122 ~ 22543980 (-) True G215262
XM_026936343.2 mRNA downstream 623092 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 623092 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 856751 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 869855 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 89215 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 162174 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 315213 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 316118 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 316119 22553630 ~ 22582102 (-) False topaz1
LOC117598907 other downstream 4499 22231972 ~ 22232468 (-) True LOC117598907
LOC117598926 other downstream 6365 22230158 ~ 22230602 (-) True LOC117598926
LOC117598812 other downstream 9020 22227441 ~ 22227947 (-) True LOC117598812
TU254998 other downstream 9024 22227448 ~ 22227943 (-) False LOC117598812
LOC117598884 other downstream 14116 22222397 ~ 22222851 (-) True LOC117598884
TU254802 other upstream 1705 22239216 ~ 22283330 (-) False G215182
TU254853 other upstream 1705 22239216 ~ 22247325 (-) False G215182
TU254859 other upstream 1705 22239216 ~ 22283330 (-) False G215182
LOC117598902 other upstream 2986 22240497 ~ 22240949 (-) True LOC117598902
LOC117598897 other upstream 6553 22244064 ~ 22244586 (-) True LOC117598897

Expression Profile