RNA id: TU254899


Basic Information

Item Value
RNA id TU254899
length 626
RNA type TUCP
GC content 0.44
exon number 3
gene id G215184
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22225641 ~ 22257250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTAATACATCCATAGTGGTCATGGACACTCCCTATTCAAATAGAGTCGGGTATAAACAGCATGTTCTTGGCTGTTCTAGTTTCCAGTGAGCTCTGTGATAGATAACACTCCCATACACTTTAAATCTGGGTGAAGCAGAACTCAGAGAAGGATGATTTTAggacattgtattttatttgtactaATTTCATATTCTTATGGACAGTCCCTGACCTCCTCTGCTTCTGTGGTGAAGAGACCTGGAGAGTCAGTCACTCTGTCCTGTACTGCCTCTGGATTCTCAATGAGCAGCTACTGGATGCACTGGATCCGTCAGAAACCAGGAAAAGGACTGGAGTGGATCGGATTCATTGACACTGGCACTAGCACTGgattctctcagtctctgcagGGCCAGTTCTCCATCACTAAAGACAccaataaaaacatgctgtaccTAGAAGTGAAGAGTCTGAAAGCTGAAGACAcggctgtttattactgtgcaggagactcacactgacacaacagactccagagctgtacaaaaacttACACAAGCACGTCCTCATGAGCTGTAAATATTCCCTCAGCAGGAAGCTGAACCCcagacacatttattataaacaacatCGACTCACTCTC

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254995 lncRNA downstream 28229 22164570 ~ 22197412 (-) True G215228
TU254781 lncRNA downstream 85501 22125672 ~ 22140140 (-) True G215172
TU254985 lncRNA downstream 89634 22080162 ~ 22136007 (-) True G215221
TU254991 lncRNA downstream 92276 22121456 ~ 22133365 (-) True G215224
TU254780 lncRNA downstream 142798 22025483 ~ 22082843 (-) True G215171
TU254830 lncRNA upstream 3747 22260997 ~ 22283330 (-) False G215182
TU255019 lncRNA upstream 81792 22339042 ~ 22344517 (-) False LOC117598814
TU255027 lncRNA upstream 133106 22390356 ~ 22397751 (-) True G215249
TU255043 lncRNA upstream 188872 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA upstream 217771 22475021 ~ 22507863 (-) True G215269
XM_026936343.2 mRNA downstream 611766 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 611766 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 845425 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 858529 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 69476 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 142435 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 295474 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 296379 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 296380 22553630 ~ 22582102 (-) False topaz1
TU254829 other downstream 2780 21809753 ~ 22222861 (-) False G215182
TU254858 other downstream 2780 21812761 ~ 22222861 (-) False G215182
LOC117598884 other downstream 2790 22222397 ~ 22222851 (-) True LOC117598884
LOC117598811 other downstream 6577 22217308 ~ 22219064 (-) True LOC117598811
TU254974 other downstream 8571 21957320 ~ 22217070 (-) False G215211
LOC117598923 other upstream 3750 22261000 ~ 22261463 (-) True LOC117598923
TU254819 other upstream 4873 22262123 ~ 22285703 (-) True G215182
LOC117598886 other upstream 7409 22264659 ~ 22265110 (-) True LOC117598886
LOC117598869 other upstream 11022 22268272 ~ 22269215 (-) True LOC117598869
TU254910 other upstream 11302 22268552 ~ 22269092 (-) True G215187

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051720 True 384 mRNA 0.45 2 NC_007114.7 34053623 ~ 34054081 (-)
grasscarp (Ctenopharyngodon idella) TU604292 False 440 lncRNA 0.43 2 CI01000398 23998 ~ 54523 (-)
tiger barb (Puntius tetrazona) TU29331 True 737 TUCP 0.43 5 NC_056701.1 13005996 ~ 13068190 (-)
mexican tetra (Astyanax mexicanus) LOC111190827 True 541 V_segment 0.45 2 NW_019172755.1 152173 ~ 152816 (-)