RNA id: TU254923


Basic Information

Item Value
RNA id TU254923
length 437
RNA type TUCP
GC content 0.42
exon number 3
gene id G215187
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21676271 ~ 22269092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATGCTGATATACATTCAGCTCAACAACATACCAgcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAACAATCTTCATTCAATATTCCTGCAGTCAGACACTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTTAACTTTGGTAGCTACTGGATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAACTATCGAGTATGATAGTGATAGGAAGTATTACTCCAGTGCAGTTAAAGGCCGTTTTACCATCTCCAGAGACAACAGTAAGCAGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254775 lncRNA downstream 30377 21645119 ~ 21645894 (-) True G215168
TU254530 lncRNA downstream 41407 21634658 ~ 21634864 (-) True G214980
TU254528 lncRNA downstream 44404 21628129 ~ 21631867 (-) True G214978
TU254527 lncRNA downstream 54350 21620678 ~ 21621921 (-) True G214977
TU254526 lncRNA downstream 59439 21616602 ~ 21616832 (-) True G214976
TU254864 lncRNA upstream 21608 22236967 ~ 22240962 (-) False G215182
TU254889 lncRNA upstream 21608 22236967 ~ 22237511 (-) False G215182
TU254808 lncRNA upstream 39067 22254426 ~ 22283330 (-) False G215182
TU254830 lncRNA upstream 45638 22260997 ~ 22283330 (-) False G215182
TU255019 lncRNA upstream 123683 22339042 ~ 22344517 (-) False LOC117598814
XM_026936343.2 mRNA downstream 62396 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 62396 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 296055 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 309159 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 111367 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 184326 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 337365 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 338270 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 338271 22553630 ~ 22582102 (-) False topaz1
LOC117598919 other downstream 2941 21672822 ~ 21673330 (-) True LOC117598919
TU254170 other downstream 649012 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1263341 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1612781 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2227937 19444989 ~ 19448334 (-) False rbbp6
LOC113546935 other upstream 383 22215742 ~ 22217034 (-) True LOC113546935
TU254973 other upstream 1147 22216506 ~ 22217070 (-) True G215211
LOC117598811 other upstream 1949 22217308 ~ 22219064 (-) True LOC117598811
LOC117598884 other upstream 7038 22222397 ~ 22222851 (-) True LOC117598884
TU254899 other upstream 10282 22225641 ~ 22257250 (-) True G215184

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051728 True 355 mRNA 0.44 2 NC_007114.7 34066959 ~ 34067392 (-)
grasscarp (Ctenopharyngodon idella) TU207647 True 248 lncRNA 0.32 1 CI01000039 6658762 ~ 6659009 (-)
eurasian perch (Perca fluviatilis) TU207647 True 379 lncRNA 0.47 3 NC_053126.1 9061296 ~ 9111224 (-)
mexican tetra (Astyanax mexicanus) TU398477 False 399 TUCP 0.44 3 NW_019172755.1 159706 ~ 161481 (-)