RNA id: TU255019


Basic Information

Item Value
RNA id TU255019
length 2208
lncRNA type sense_over
GC content 0.41
exon number 5
gene id LOC117598814
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22326726 ~ 22364265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAAATgatttagaattaaaaaaattttaagaaaGCACTGTTAGCTTCACAATactgtagtgatgagtgtaattCTGCtaagttattaataataataataataataataataatattaataataataataataaattgtcgatttcaatgtaaaataaacaattgtatgtaaaaaaaaaaactcgtttttatataaataagtcAAATTTATTAGTTTAAGTTTTTGTTGACTTGTCTCATGTTTCAAAAAAATTCGTACCTTACAATTCGTACCTTACCAGAACGGATTAAATCGTAAGAAAAGGGCGTGTTTAGTGATCGTACCCTTTTTCTTCCTCACAATGTCAATCGTCTGAAATGCAACGAAATCTCATTCAGTTGTAAAACTGCGTACGGAGTTTGTGCGAGAGCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTGCGGCTCGGCCTCAGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCGGGAGCGGAGGGTTCACCTCGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGttgtGCCCGAGCTCCCTGCATCTCTGCTTCTAACAACTCCAACCCAAACAGAAATAGACAATGGAACAGCTACCTTCATCTGCTTAGCTACACAATTTtcccctaaaacacacacatttaagtGGACTCGTGGCAGCACGGAACTCGGTAATAAGGTCAAACACACCATATTAAGCCCGGATAAAGATGCTTACACTGCTGTAAGTATTTTGGAAATCAGCGCCAATGAATGGACGGGTTCATCATCTCCAGTTAAGTGCGAATTCCACCAGAAGAAATGGACTGCGGCCAAAGAGGCGATTTATgTGTCAGTTGACTCAAAACCACCACAGGTGAAAATAATCCCACCTTGCGCCAGGGACATGCTGCTCAAAAGAGCTGGCCAGCTCGAGTGCAGGGCCGAAGGACAGGTGGGCTTCAAGGGCATTAAATGGCTTATTGGCGGTACAGAGATCTCTTCCCTAGCGGAAAAAGACGTATCTACGGAAACCACGGTCACACTCACGACCCCGATCAGTTTCGATGAGTGGAGCGATGGCACCAAATTCACCTGCGAAGTGGAACATTCAGCATTCGCCCTCCAGTATGAAACAGTAGACTTGCTATGTAAAAGACTTCTACCCTAAGGAGGTGGCTGTGTCTTGGCTTGTTAACGATGAACAAGTGGACGATGAGGGCGGCTATGAGCAGAACACCACTAGAGTTATCGAGAGAGGCAACCTCTTTTCAGTGTACAGCCAGCTGATTGTGAAAACTGCAGAATGGAAGAGTGGCGCCGTGTACAGCTGCAGGGTTTATCACGAGTCCATCGAGGACCCTGTGCGCCTCATATCCAGATCCATCACTATCACTTCAAATCCACCCACCTTAGTGAATCTCAGCCTGAACGTTCCACAAACCTGCCATACGTTTTAGAAATTGTGTTGTCTGCTTTTaatgcttgttttatttttatttttgccctGTCttctatgtcttttttttttttttaattaatgcaatGTCATTGTCTTGAAGTCTGTCTAATGCTTGTGTGTCCTTGGTTTTTGGAATATGTCTGATGCAATATTACACtgaaacaatgacaataaaaaaatccttcagCATGTACCCTGTGCAGTACGGaaatattatagtattatattacACTAACTTTATACATCACTATCTTAGCATATCCTAAATATGGATATCCCAAAATAATGCCATGGCTGCACCTGGATTGGATTTGAGTTAAGACATTTTAGtcacagctgctttaatgtcCTCCTTCAGCCTTTAAGGGAAATATCTGATTGCATTTTCCCTAAAACTGTACAGTATCTTTCAAAATGCTCACaaatatacaattaaaaaataagcaaataattaaTATGGGCTTCAAAGATCTATCAAATATCTctttaaattatttcataaaattaAGAAAGACAAATCTATTAATAAACTATTAATTTTGTTAATAGAGATTGATCCAAAGCTTTCCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254808 lncRNA downstream 55712 22254426 ~ 22283330 (-) False G215182
TU254830 lncRNA downstream 55712 22260997 ~ 22283330 (-) False G215182
TU254864 lncRNA downstream 98080 22236967 ~ 22240962 (-) False G215182
TU254889 lncRNA downstream 101531 22236967 ~ 22237511 (-) False G215182
TU254995 lncRNA downstream 141630 22164570 ~ 22197412 (-) True G215228
TU255027 lncRNA upstream 45839 22390356 ~ 22397751 (-) True G215249
TU255043 lncRNA upstream 101605 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA upstream 130504 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA upstream 133459 22477976 ~ 22480922 (-) True LOC117598972
TU255283 lncRNA upstream 312025 22656542 ~ 22704479 (-) False smim13
XM_026936343.2 mRNA downstream 725167 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 725167 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 958826 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 971930 21360562 ~ 21367112 (-) True arl9
XM_034310140.1 mRNA upstream 55168 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 208207 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 209112 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 209113 22553630 ~ 22582102 (-) False topaz1
XM_026947029.2 mRNA upstream 209114 22553631 ~ 22582102 (-) False topaz1
XR_004579410.1 other downstream 17309 22321174 ~ 22321733 (-) True LOC117598975
LOC117598862 other downstream 18767 22319544 ~ 22320275 (-) True LOC117598862
TU255010 other downstream 25171 22312921 ~ 22313871 (-) True LOC113546926
LOC113546926 other downstream 25605 22312787 ~ 22313437 (-) False LOC113546926
TU254867 other downstream 53339 22244170 ~ 22285703 (-) False G215182
XR_004579404.1 other upstream 64717 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other upstream 69150 22413667 ~ 22419910 (-) True LOC117598969
TU255282 other upstream 353896 22698413 ~ 22704479 (-) False smim13
TU255280 other upstream 425120 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 792409 23136926 ~ 23156666 (-) False G215624

Expression Profile