Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU255128 |
| length | 216 |
| lncRNA type | intronic |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G215336 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22735771 ~ 22735986 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU255084 | lncRNA | upstream | 9125 | 22724687 ~ 22726646 (+) | True | G215294 |
| TU254759 | lncRNA | upstream | 330247 | 22401950 ~ 22405524 (+) | True | G215153 |
| TU254702 | lncRNA | upstream | 334451 | 22133202 ~ 22401320 (+) | True | G215107 |
| TU255136 | lncRNA | downstream | 42630 | 22778616 ~ 22779241 (+) | True | G215343 |
| TU255137 | lncRNA | downstream | 44304 | 22780290 ~ 22780576 (+) | True | trnat-cgu_7 |
| TU255085 | lncRNA | downstream | 91035 | 22827021 ~ 22830832 (+) | True | G215295 |
| TU255144 | lncRNA | downstream | 105358 | 22841344 ~ 22909078 (+) | True | G215350 |
| TU255154 | lncRNA | downstream | 118259 | 22854245 ~ 22857421 (+) | True | G215360 |
| XM_026947097.2 | mRNA | upstream | 113791 | 22614859 ~ 22621980 (+) | True | cckb |
| XM_034309815.1 | mRNA | upstream | 186905 | 22537502 ~ 22548866 (+) | True | LOC113546929 |
| XM_034309814.1 | mRNA | upstream | 244860 | 22463154 ~ 22490911 (+) | True | LOC113546930 |
| XM_034309812.1 | mRNA | upstream | 1103865 | 21620631 ~ 21631906 (+) | True | rest |
| XM_034309850.1 | mRNA | upstream | 1189679 | 21541990 ~ 21546092 (+) | False | LOC113540583 |
| XM_034310059.1 | mRNA | downstream | 4954 | 22740940 ~ 22754432 (+) | True | rnf44 |
| XM_034310061.1 | mRNA | downstream | 4954 | 22740940 ~ 22754432 (+) | False | rnf44 |
| XM_026947101.2 | mRNA | downstream | 4954 | 22740940 ~ 22754432 (+) | False | rnf44 |
| XM_026947039.2 | mRNA | downstream | 29828 | 22765814 ~ 22769636 (+) | True | higd2a |
| XM_026947025.2 | mRNA | downstream | 45380 | 22781366 ~ 22825233 (+) | True | pdlim7 |
| LOC117598850 | other | upstream | 199995 | 22495208 ~ 22535776 (+) | True | LOC117598850 |
| LOC117595678 | other | upstream | 234401 | 22500883 ~ 22501370 (+) | True | LOC117595678 |
| LOC113546936 | other | upstream | 265093 | 22470179 ~ 22470678 (+) | True | LOC113546936 |
| TU254763 | other | upstream | 266188 | 22463100 ~ 22469583 (+) | False | LOC113546930 |
| LOC117598940 | other | upstream | 338201 | 22397112 ~ 22397570 (+) | True | LOC117598940 |
| TU255135 | other | downstream | 29828 | 22765814 ~ 22769627 (+) | False | higd2a |
| trnat-cgu_7 | other | downstream | 44300 | 22780286 ~ 22780357 (+) | False | trnat-cgu_7 |
| TU255140 | other | downstream | 99678 | 22835664 ~ 22835902 (+) | True | G215347 |
| TU255422 | other | downstream | 401260 | 23137246 ~ 23170553 (+) | True | G215621 |
| TU255420 | other | downstream | 405766 | 23141752 ~ 23170218 (+) | False | G215621 |
