RNA id: XM_026947038.2


Basic Information

Item Value
RNA id XM_026947038.2
length 3494
RNA type mRNA
GC content 0.40
exon number 5
gene id cltb
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22769637 ~ 22779068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGCTCCTTCAGGATATtccttaaataaatgcaaaaaaagaaaaaataaaataagaaaatccagtgtgtgtttgctccCGCGTCTTTATTTAGTACCGAACGGTTGAATTAGCCAGTTGGCTAgttttcatttcacacacacacacacacacacacacacagacacagacagagagagagagagagagagagagagagagaacaccaCAGCTGGAGTGAGTGAAGCGAGTGGCAGTGAGTCAGTTACTGGCTGGAAAATGGCCGACGCGTTCGGACTGCAGGCGGAAGAGGACCCCGCGGCCGAGTTCCTCGCGCAGCAGCAGCACGAGATCGCCGGCATCGAGAATGACGAGGACGGCTTCGGCTTCGAGTTCGAGGCGCGCGACCAACAAGCAGAAGCTGCACAATCCCAACCGTCACATTTCAGTTCGAACTCTTTCGAAGcAGATGAGTTCAGAGGAGCAACTATGAATGGAGAATTGTTTCAGTCCAACGATATAGCAGACGGTTACGCGGCTATCGCCCAGGCTGATGTGCAGCGGCAGGAGCCTGAAAGTTTACGCAAGTGGAGAGAGGAACAGAAGGCACGGCTGGAACAGTTAGATTCAGCATCCAAAGCAGCAGAAGTTGAGTGGAGGGAGAAGGCAAAGAAGGAGCTGGAGGACTGGCATGCTCACCAACAGGAGCAAATGGAGAAGAATAAAGTCAACAACAGagcgtcAGAGGACGCCTTTCTGAAGGAGTGCGACGACGACAGCCCCGGCACCGAGTGGGAGAAAGTGGCACGGCTATGCGACTTCAACCCCAAGACGAGCCGCCAGACGAAGGACGTGTCCCGAATGCGCTCCGTCCTCATTTCCCTGAAACAGACGCCGCTGGCTCGCTAAGACCTCGTCTCACTCTGCCTCACGTCTCaccttctctccatctccctctccctGTCCTTCTCGCACTTTATTTTAGCACACGCTAAATGTTTGGgttttctttctgtcatttaAGGGGTATGGtgaattgaaatttaaaaaaaaaaaacatttctgttacacATAATCTGTATCAACTGACAGAAAAGCATTttctggattgtttttttttttttgtctgtttttatgcCAGAAAAGGAGAATTATGCCTCTTGAGTAGGCTAGTTGAGGATCAAGTGCAGGAGTGTGACCCTCAGACCACCTcagagcaaaattaaaaacacagatcAAACAGACACGAGACTCTGGGTGGACAAAATGGCAGAAATTATCCTGCCACTGTACTTGAAGACATGTTACGCATCAAAATTTTGAAGAAAGCTAACATTAAACAGCAAAAGCAGTATCAGATGTTCAACATTTACCAAAAGAAACTATTTTATAAGGAACAGAAAGCAAAATTGGTGCAGGTTTAATTTGAGTTGCTGTATAttgttactatttattattatccgGCTCTCTGTACTTCAGTTCTTCCCAAATTGGTCCTCTGAGATACCCAGATGTTCcacttttaaacacattaaatgccACAACATGGCGGCTAATGACAACAGTTGGACATCTACCGAAAATGCTGGTCcaaaatgtgctgttttagtATTTTTGGTGTCTGAAATGCACCACCATATCCCCAAGCAGTCctgaatacccataatgcactgtgctCTTTGGTTTGATTCGCATGCGCATGAGAGAACCAGCAAGCTAAAATGGTAGCATCGAACTTCAGATTTGCAGATTAGTAATGGgaattattattctatttttttagcgagtcagatcatttgactcttATTACAGTAGACTCTTTCAGCTCCCAaatggctgattggcatttttTTCCTAAACTGAACAAAAGTTCGCTATATTTTGATTGTTGATTGTTCTTCTTTGCCTGAAAACTAccttaattttataattaacagAATAACATTTACTTAGCATTGGATGTCagaaaaaatagatttaaatagttgttaaaataaatcagcaaaGCACTACAAATGTGCATACGATAaagattcattttaattcatattcagtCATCTTCCCTTATACTATAACCACATGGTCAAATGTTGAAAAGAGGTTTCCATGGAAACGTTCTGATTACATATGCATATTTTTTGATTACAACGATCACCGATGAGTCGACTCGCTGACAAACGAAGCTTCACTGTTACAAATGTAAGAAGCAGATTTCTGTAACCACGTGTTCGGTCTACAGGCAGCGCCTTCACACTGCTGTGTTTCAGGTCAAATAATCGTACATGTCATAAAACGTTTAATCGCAAATTCTGTTCCCTACAGCAGTGTCCGATACGAGTGATATCCTACAGTGTGGGATTTGAGATTCGTATTAATGCCTCAGAGATGTCTTAGATGATGAGAGTTATCAAAAATGTGGACTGTCTGGGGATCCAGTCACTAAAGACCAATTTGGGAAACACGCTTTAATTGGTCTAAATAGCAGAATGACATAATTGAAGGagtatttgaataattttataattatgctAACTTTGCTAATAATTTTATCATTGTGCTAACCCTACACTGATTAACCTGAGATTTGAAAACTCGCGGATTATTGTTACTCTTCAGAGAACGGCAAAAACGAGGGTATTTTAATTTTCCATTCAAAGTAAAATACAGCGTATTCATACTGTAGCTCATAATATTGATTATTGCATGTTTTGCTTATTTCTGCTCAAGTTCATGAAGGTTGGCAATAATTCTAGACTTCTATCCATTCTTGTTTTCCTATTTCCATCAAACCTGTTGTATTGTAAGTTAAATCCCATTTCCCCCAAATATTTCTGGAAAACTAACAAATATTGAACAGTTATATTCAAGTAGGTTATTTGTTCAGTGGATTATTTATTGGTGGTCTTGTTTATACCATTCAGGCTCGcgtgtattgattataaaatttCAGATTTGAGCTGTAGCAGGCTTTGCCTTAATTAGTATGTCATCACATCCCAGTTCAGATATAATCAGTTGAGCATGTGTTGAAGTGTtacagatatttatatttaccatcagttacatttactgtcttACAGCTTTGAGGCCTTTTTCTCCAAGACAGATTTCAAAACTGTTACTTGCCTTTCAGCGGACCAGCTCTGTTGTGCTGTGCGACAGATTGTGGTTTTTACTGGCTGCCAAAGACTGTATGTTCATGCCTGACTACgctataaatgaaaaaaataaaaaatatatatattgggATGGTTTTCCAGACACAACTCAATTCAGTTCTTTGGATGTAGGAAAGACTCATTAGGTTTGGTGTATTTTGTCTGGATGATCATCTCAGGTTTGTTTCACATTATTAGAGACACTTTTAGCAAACGGTAGGACGTGGTAGAGGTTGAAGTGAATTGTAATGGAATAGCTTCTGAAATGTTTCCAAACTCGATcgtaattgtgtgtgtatgaaaacgCGGACACAATTCTGACATGCAGaactcaataaaataaaaatgtaaaaaaca

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0030118 clathrin coat cellular_component
GO:0012505 endomembrane system cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255292 lncRNA downstream 14532 22754560 ~ 22755107 (-) True G215494
TU255308 lncRNA downstream 32160 22737276 ~ 22737479 (-) True G215509
TU255306 lncRNA downstream 35544 22733729 ~ 22734095 (-) True G215507
TU255283 lncRNA downstream 65160 22656542 ~ 22704479 (-) False smim13
XR_004579407.1 lncRNA downstream 288717 22477976 ~ 22480922 (-) True LOC117598972
TU255287 lncRNA upstream 2266 22781323 ~ 22815252 (-) False G215489
TU255291 lncRNA upstream 9159 22788216 ~ 22797514 (-) True G215493
TU255286 lncRNA upstream 29342 22808399 ~ 22815252 (-) True G215489
TU255289 lncRNA upstream 43663 22822720 ~ 22826241 (-) True G215491
TU255367 lncRNA upstream 182883 22961940 ~ 22962156 (-) True G215568
XM_034310258.1 mRNA downstream 5768 22755981 ~ 22763871 (-) True faf2
XM_034309816.1 mRNA downstream 39786 22706554 ~ 22729853 (-) True cdhr2
XM_026947021.2 mRNA downstream 65156 22698404 ~ 22704483 (-) True smim13
XM_034309654.1 mRNA downstream 80257 22678164 ~ 22689382 (-) True LOC113546904
XM_026947083.2 mRNA upstream 47887 22826944 ~ 23035173 (-) True unc5a
XM_026947066.2 mRNA upstream 506651 23285708 ~ 23297814 (-) False dok3
XM_026947065.2 mRNA upstream 506651 23285708 ~ 23294554 (-) True dok3
XM_026947064.2 mRNA upstream 506651 23285708 ~ 23294551 (-) False dok3
XM_026947063.2 mRNA upstream 518892 23297949 ~ 23309411 (-) True LOC113546952
TU255282 other downstream 65160 22698413 ~ 22704479 (-) False smim13
XR_004579404.1 other downstream 349729 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 349729 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 405374 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 447906 22321174 ~ 22321733 (-) True LOC117598975
TU255434 other upstream 357869 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 545428 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1761778 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 2085590 24864647 ~ 24864718 (-) True trnad-guc_6
trnap-agg_10 other upstream 2905083 25684140 ~ 25684211 (-) True trnap-agg_10

Expression Profile