Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU255448 |
| length | 609 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 5 |
| gene id | LOC113546955 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 23231518 ~ 23298835 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU255274 | lncRNA | upstream | 254627 | 23035455 ~ 23035659 (+) | True | G215479 |
| TU255271 | lncRNA | upstream | 262667 | 23026443 ~ 23027619 (+) | True | G215476 |
| TU255220 | lncRNA | upstream | 360489 | 22929488 ~ 22929797 (+) | True | G215425 |
| TU255144 | lncRNA | upstream | 381208 | 22841344 ~ 22909078 (+) | True | G215350 |
| TU255458 | lncRNA | downstream | 16334 | 23315169 ~ 23315568 (+) | True | G215638 |
| TU255457 | lncRNA | downstream | 17991 | 23316826 ~ 23317147 (+) | True | G215637 |
| TU255476 | lncRNA | downstream | 19910 | 23318745 ~ 23319138 (+) | True | G215656 |
| TU255485 | lncRNA | downstream | 57356 | 23356191 ~ 23359559 (+) | True | G215664 |
| TU255488 | lncRNA | downstream | 65523 | 23364358 ~ 23364580 (+) | True | G215666 |
| XM_026947067.2 | mRNA | upstream | 4666 | 23283248 ~ 23285620 (+) | True | atoh1b |
| XM_026947057.2 | mRNA | upstream | 119437 | 23168344 ~ 23170849 (+) | True | LOC113546948 |
| XM_026947060.2 | mRNA | upstream | 127043 | 23160463 ~ 23163243 (+) | True | LOC113546950 |
| XM_034310058.1 | mRNA | upstream | 133578 | 23147197 ~ 23156708 (+) | True | LOC113546924 |
| XM_026947058.2 | mRNA | upstream | 146526 | 23141714 ~ 23143760 (+) | True | LOC113546949 |
| XM_026947085.2 | mRNA | downstream | 44126 | 23342961 ~ 23355343 (+) | True | LOC113546963 |
| XM_026947121.2 | mRNA | downstream | 158968 | 23457803 ~ 23554508 (+) | True | LOC113546983 |
| XM_026947123.2 | mRNA | downstream | 158968 | 23457803 ~ 23554508 (+) | False | LOC113546983 |
| XM_026947122.2 | mRNA | downstream | 158968 | 23457803 ~ 23554508 (+) | False | LOC113546983 |
| XM_034310312.1 | mRNA | downstream | 158968 | 23457803 ~ 23550413 (+) | False | LOC113546983 |
| TU255422 | other | upstream | 119733 | 23137246 ~ 23170553 (+) | True | G215621 |
| TU255420 | other | upstream | 120068 | 23141752 ~ 23170218 (+) | False | G215621 |
| TU255140 | other | upstream | 454384 | 22835664 ~ 22835902 (+) | True | G215347 |
| trnat-cgu_7 | other | upstream | 509929 | 22780286 ~ 22780357 (+) | False | trnat-cgu_7 |
| TU255135 | other | upstream | 520659 | 22765814 ~ 22769627 (+) | False | higd2a |
| XR_004579446.1 | other | downstream | 432619 | 23731454 ~ 23740984 (+) | True | LOC113546919 |
| TU255678 | other | downstream | 443720 | 23742555 ~ 23748067 (+) | False | igfbp7 |
| XR_004579369.1 | other | downstream | 892918 | 24191753 ~ 24327960 (+) | False | rbfox1 |
| XR_004579370.1 | other | downstream | 892918 | 24191753 ~ 24327960 (+) | False | rbfox1 |
| TU256099 | other | downstream | 1158235 | 24457070 ~ 24458004 (+) | True | G216197 |
