RNA id: TU255457


Basic Information

Item Value
RNA id TU255457
length 322
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G215637
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23316826 ~ 23317147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCACGTGCTGGCTGTTAGATGAGCTGCGTTAGTGGAGGCTGCGCTGGCGCCGTTGGTGTTGTGTCCGTTACACGGGTGATTGCAGCCCATCATGGAGGAGCTCAGTTTGGCGTTTTTGCAGGTGCTGGGTTTTTCCTGCCCGCCCGAGTGCTTGGCGCTGAGGTTTGGTGCTAGCGGAGTGAACGGAGCGTGCTGATTGGATGtgggtttggtggaggggggcaGCAGAGATGAATTCTGGGAAGAAGAGAGACCCGTCGGACTGTTGGGTGGAACGGACAGGTCCGCCGACGGCTGGTGCTGCTCGTTCGGGTGAAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255458 lncRNA upstream 1258 23315169 ~ 23315568 (+) True G215638
TU255449 lncRNA upstream 17991 23231518 ~ 23298835 (+) True LOC113546955
TU255448 lncRNA upstream 17991 23290286 ~ 23298835 (+) False LOC113546955
XR_003404766.2 lncRNA upstream 18124 23290334 ~ 23298702 (+) False LOC113546955
TU255274 lncRNA upstream 281167 23035455 ~ 23035659 (+) True G215479
TU255476 lncRNA downstream 1598 23318745 ~ 23319138 (+) True G215656
TU255485 lncRNA downstream 39044 23356191 ~ 23359559 (+) True G215664
TU255488 lncRNA downstream 47211 23364358 ~ 23364580 (+) True G215666
TU255489 lncRNA downstream 49134 23366281 ~ 23366795 (+) True G215667
TU255511 lncRNA downstream 71271 23388418 ~ 23389235 (+) False G215685
XM_026947067.2 mRNA upstream 31206 23283248 ~ 23285620 (+) True atoh1b
XM_026947057.2 mRNA upstream 145977 23168344 ~ 23170849 (+) True LOC113546948
XM_026947060.2 mRNA upstream 153583 23160463 ~ 23163243 (+) True LOC113546950
XM_034310058.1 mRNA upstream 160118 23147197 ~ 23156708 (+) True LOC113546924
XM_026947058.2 mRNA upstream 173066 23141714 ~ 23143760 (+) True LOC113546949
XM_026947085.2 mRNA downstream 25814 23342961 ~ 23355343 (+) True LOC113546963
XM_026947121.2 mRNA downstream 140656 23457803 ~ 23554508 (+) True LOC113546983
XM_026947123.2 mRNA downstream 140656 23457803 ~ 23554508 (+) False LOC113546983
XM_026947122.2 mRNA downstream 140656 23457803 ~ 23554508 (+) False LOC113546983
XM_034310312.1 mRNA downstream 140656 23457803 ~ 23550413 (+) False LOC113546983
TU255422 other upstream 146273 23137246 ~ 23170553 (+) True G215621
TU255420 other upstream 146608 23141752 ~ 23170218 (+) False G215621
TU255140 other upstream 480924 22835664 ~ 22835902 (+) True G215347
trnat-cgu_7 other upstream 536469 22780286 ~ 22780357 (+) False trnat-cgu_7
TU255135 other upstream 547199 22765814 ~ 22769627 (+) False higd2a
XR_004579446.1 other downstream 414307 23731454 ~ 23740984 (+) True LOC113546919
TU255678 other downstream 425408 23742555 ~ 23748067 (+) False igfbp7
XR_004579369.1 other downstream 874606 24191753 ~ 24327960 (+) False rbfox1
XR_004579370.1 other downstream 874606 24191753 ~ 24327960 (+) False rbfox1
TU256099 other downstream 1139923 24457070 ~ 24458004 (+) True G216197

Expression Profile