RNA id: TU255678


Basic Information

Item Value
RNA id TU255678
length 715
RNA type TUCP
GC content 0.65
exon number 4
gene id igfbp7
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23742482 ~ 23748131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACCGACGCGCTCGTGCCCCGGTGCTCTGTTCCAGTCATGATGCTGTGGGTTTTAATTCTCCCGGCTCTGACCGCCGCTGCTGTCCCGCGCTCCTGCGGGCCCTGTGAGCCGAGCTCGTGCGCCGCGCTGCCGGCTGCGGGATGCGCGTTCCGGGTGATGGACGCGTGCGGCTGCTGCGAGCTGTGCGCCGCCGGACCGGGAGAGCCGTGCGGGGTGCGCGGTGCCACGGTCACACGGTGCGCGCCCGGTCTCGAGTGCGTTAAAGCCCCGGAGGACAAGAAcaagctgaagaagaagaagaccgAGCCGGGCGTGTGCGTGTGCAAGAACGGCGACTTCGAGGTGTGCGGCTCGGACGGGGTGGAGTACAGGAGCGTGTGCGCGCTGAGAGCCGCGAGCGCGTCCGCCGAGCGTCAGCACAAAGCCGGCATTAAAGTCCGCAACAAGGGCAAATGTGCCAGAGctCCTGTGATCGTTACGGGTCCGGGTCAGGTCTGGAACGTCACCGGTGCTCAGGTCTTCCTCAGCTGCGAGGCCATCGGCGTCCCCACACCGGTGCTCAGCTGGAGGAAGGTCATGGACAATAAGAAGTTCTCTCAGATGCTCCCCGGAGACCAAGACAACCTCGCCGTCCAGGTGCGAGGAGGCCCCGAGAAGCACGAGGTCACCGGATGGGTGCTGATCTTCCCTCTGACCAAGGATGTAGCGGGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255659 lncRNA upstream 119946 23622372 ~ 23622609 (+) True G215824
XR_004579448.1 lncRNA upstream 148907 23591868 ~ 23593648 (+) True LOC117599008
TU255512 lncRNA upstream 353202 23388418 ~ 23389353 (+) True G215685
TU255511 lncRNA upstream 353320 23388418 ~ 23389235 (+) False G215685
TU255489 lncRNA upstream 375760 23366281 ~ 23366795 (+) True G215667
XR_004579396.1 lncRNA downstream 140 23748207 ~ 23751597 (+) True LOC117598845
TU255669 lncRNA downstream 141 23748208 ~ 23751596 (+) False LOC117598845
TU255727 lncRNA downstream 171020 23919087 ~ 23920371 (+) False fbxl16
TU255907 lncRNA downstream 557885 24305952 ~ 24329994 (+) False rbfox1
TU255908 lncRNA downstream 557885 24305952 ~ 24329994 (+) False rbfox1
XM_026947043.2 mRNA upstream 1165 23731454 ~ 23741390 (+) False LOC113546919
XM_026947010.2 mRNA upstream 12443 23712519 ~ 23730112 (+) True cpxm1b
XM_026947123.2 mRNA upstream 188047 23457803 ~ 23554508 (+) False LOC113546983
XM_034309675.1 mRNA downstream 19507 23767574 ~ 23772974 (+) True noa1
XM_026947012.2 mRNA downstream 26313 23774380 ~ 23778006 (+) True eef2kmt
XM_026947110.2 mRNA downstream 36569 23784636 ~ 23790699 (+) True c13h16orf89
XM_034309779.1 mRNA downstream 62232 23810299 ~ 23813635 (+) True si:ch211-76l23.4
XM_034309778.1 mRNA downstream 62233 23810300 ~ 23813635 (+) False si:ch211-76l23.4
XR_004579446.1 other upstream 1571 23731454 ~ 23740984 (+) True LOC113546919
TU255422 other upstream 572002 23137246 ~ 23170553 (+) True G215621
TU255420 other upstream 572337 23141752 ~ 23170218 (+) False G215621
TU255140 other upstream 906653 22835664 ~ 22835902 (+) True G215347
trnat-cgu_7 other upstream 962198 22780286 ~ 22780357 (+) False trnat-cgu_7
XR_004579369.1 other downstream 443686 24191753 ~ 24327960 (+) False rbfox1
XR_004579370.1 other downstream 443686 24191753 ~ 24327960 (+) False rbfox1
TU256099 other downstream 709003 24457070 ~ 24458004 (+) True G216197
TU256100 other downstream 709003 24457070 ~ 24458004 (+) False G216197
TU256141 other downstream 781612 24529679 ~ 24539042 (+) False si:ch211-157c3.4

Expression Profile