RNA id: XM_034309944.1


Basic Information

Item Value
RNA id XM_034309944.1
length 3573
RNA type mRNA
GC content 0.43
exon number 12
gene id rbfox1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24038908 ~ 24330000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGCGTCACCGGCACTCCGAGCGCGAGCGTGGACGCGTAGCTGTAATTGAACTCGTTCACCAAatctttttttggtttgtttgtttttttgtatatatatatatataaaatctaaaatctacctgctttgtgctttgtgtgaGCATCCGTTACTCGGGGACGCGCGAGACGAAGCACTTTTACGCGTTTTCCCCCGCGCGCTATTGAGGCtaccgagtgtgtgtgtgtttgtgagtgactgtgtgtgtgtgagtgtgtgtgtgagagagaaagaggtacTGAGTTTCGGCGGAGCAGCCTGCAGGAGAAAAGCACgagcagaaggagaaggagtgCGCGCGAGATGCTGCATCCGCTCACAGGCGCCCCGTGCGTGGCCCTGGCTGAGGTGGGCGCGCGCCCGCAGCTGTCCTCCTCGTGCGCCGTGACTTTCGTCTACCTGCAGCAGggtaaTCAGGACGCCCCCGCCCCACCGGAGCCCATGGCCCAGCCGTACCCCTCCGCCCAGTTCGCCCCCCCTCAGAACGGCCTGCCCACCGAGTACCCGGCGTCTCACCCTCACCCCGCCCCCGAGTACCCGGGCACGAGCGCCGTACCTGAGCACACGCTGAACATGTATCctgcagcgcacacacacagcgagcCCAGCGCCGAGTCCAGCGCACACACCGTCTCCGGCACAGCCACGCAGACAGACGACGCagcacagacagacagccagCAACAGACGCAGTCCTCCGAAAGCACGGAAAACAAGACGCAGCCGAAGCGACTCCACGTCTCCAACATTCCCTTCAGGTTCAGAGATCCAGACCTCAGGCAAATGTTCGGCcaaTTTGGTAAAATCTTAGATGTTGAGATCATTTTTAATGAGCGGGGCTCTAAGGGTTTTGGTTTCGTAACTTTCGAAAGTAGTGCTGATGCGGACAGGGCGAGGGAGAAATTACACGGCACGGTGGTAGAAGGCCGTAAAATAGAGGTGAACAATGCAACAGCACGAGtaatgacaaacaaaaagacagtCAACCCATATGCAAACGGCTGGAAGTTGAATCCTGTGGTAGGTGCAGTCTACAGCCCAGAATTCTATGCAGtgccAGGCTTCCCGTACCCAGCTGCCACAGCGGCTGCAGCCTACAGAGGGGCGCACTTAAGAGGGAGAGGACGCACAGTGTACAACACATTTCGGGCAGCAGCTCCTCCACCACACATCCCAGCATACGGAGGTGTCGTGTACCAGGACGGATTTTATGGCGCAGATATTTATggcGGTTACGCTGCCTACCGATACGCCCAGCCTGCCACAGCTGCAGCTGCCGCCTACAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACAACCACGCACTTGCTCCAGCAGCCACATACAGCGTTGGTGCCATGAACGCTTTCGCACCGCTGACCGACGCCAAGACCAGGAGCCACGCGGACGACGTGGGTCTCGTTCTTTCTTCGCTGCAGGCTAGTATATACCGAGGCGGATACAGCCGTTTCGCTCCAtactaaaaaaaggaaatataatacacacacctATCTCAACTCAACTCAACGCGAATTCTTCCCGAGGGTGGTACAGAGGGAATCACTTTTCCGAGGCCTGGGTATTGCAATACAATGCAGTCGTGCATCATTTTTCAGCACCTCTTGCGgaggagagagacaaaaaaaaaaaacggatatTTTTCATCTTATACCTCAAGATATTTTGTgctgtgtattttaatattgtgggtttttaatttctaaaacatAGAATCGTTGGCTGTAGAGGTTTCTGTGGTGATCTAGAGAGCTgctagatttaaaaacaaaaaaagaagacgtttaaaggaaaacaaaaaaaaaaaacaaattgttaGGGCTTTatcatttatgtaaatgaatTATGTATGATAAATATTTAGTCCCTTGGGGTGATCATATTTTGTAAGTGACTACAGTAGTACTGGATTTCTGCTTTTCGTTTTTCGGttctttttttgggggtttttatGGTGGATAAACGGCCCAGACACCCACGGAAGCAGCAGCAGGACGGGGCAGGAGGGAAACGAGCCCCGCCCTGAGTGGCACGAAGACACAACAGGGAGGAGCAAACCACTAAAGCATTGATTATTTCCTCCGTCTGATACCAGTCATTACTCCAAGCCAaagtttacttttatttttattttctttttttaatcttacatGTTCTTCTCCCTGAGTTTTACATAGCAGCTCTTAGAGTAACTCCAAAACTTCACCATGACAGTATTTCACATTTAATCTGTTATCTAGTTTGTAGGTTTAGACCCTGACTAGTTTTACGCCAACCACAGATGttcttcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatagcggTACTTCCACTATATTGGTTGATTTGCTGACTTTTATATTATGGGAGAGATGAACTTTAAAAaacatagattaaaaaaatgcgGTAAAAGTAGTggtgtttatattttttctctcttttttttccaaaagtaACGATTATTTGTACCAGATGAAAGTGGGGGGTGAATTATAatgatactaataataatttataataatattaataataatattagaaataacAAACCAAGTATATTGCATATGAGCTGTTCAGTGGAAAATGTTCTCTTCTATGAAATGCACAGCTGTGTAATGTTTTAGATTTTAGCGTGGTTAGAAGAAGgtgtctcttttattttttgttttaattttttttttaaacgggAATCATACTCCAAATTTATATCAACACAAGTTCACACAAGTAATGCAATCACTATTGTATATAtgattatgatatttttgtctgtaCTATTTTGCACACGCAAcctgcatttgtttttcatgaattttttgctattattattattattattattattattattattatttagcttttattattttcgaGGTCATTTGTAACGTGACATCCTTTGTAAGGTTATTTTCTAGAGACGCAGCCTTTACATTTTGAAAACCGTTCGGAAACCTGAGAACTATAGGACttgtgaaaaaagaaatctatatgtaaatatgaataaggatcaatatgtcatttttccaagtgctacacaaataaaaccaaGTGCTCCACTTGGCTGTGCATACACGAAGAAAAACTTCCCTTCCTGTTGTTTACAAGTATATCTACTTAGAGATGTTTGTCACAtatctcctttttttaaaaacttaaaaatatgtcgataaaaaaatattaaaatgaaaataaataaataaaatagggCAGCAGCTCAAATTTATCCGGCTGCGAATAtcctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgtgtgtgtgcgtgtgtgtgtgtgttatcacaCACCCGGGGCGAGAAAATTGATCGTATTCCACTGCTGTAACTCTGCTATACTTTTCTGCTTCCAGTAGGTGTTGTGAAACGGGCCTTTTCTCCTTGTCATTGTATGTGCATGCACTCTATGATCCGCATAACAGTAACCATCAATAAAGTTTCTCAAGATAAGGAGAA

Function

GO:

id name namespace
GO:0021854 hypothalamus development biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255727 lncRNA upstream 271384 23919087 ~ 23920371 (+) False fbxl16
XR_004579396.1 lncRNA upstream 440158 23748207 ~ 23751597 (+) True LOC117598845
TU255669 lncRNA upstream 440159 23748208 ~ 23751596 (+) False LOC117598845
TU255659 lncRNA upstream 569146 23622372 ~ 23622609 (+) True G215824
XR_004579448.1 lncRNA upstream 598107 23591868 ~ 23593648 (+) True LOC117599008
XR_004579340.1 lncRNA downstream 11688 24341688 ~ 24363384 (+) True LOC117598769
XR_004579339.1 lncRNA downstream 11688 24341688 ~ 24344903 (+) False LOC117598769
TU256072 lncRNA downstream 93766 24423766 ~ 24444172 (+) True G216174
TU256065 lncRNA downstream 115073 24445073 ~ 24447468 (+) True G216171
TU256086 lncRNA downstream 129385 24459385 ~ 24461889 (+) True G216185
XM_026947023.2 mRNA upstream 271352 23894247 ~ 23920403 (+) False fbxl16
XM_026947022.2 mRNA upstream 276256 23894247 ~ 23915499 (+) True fbxl16
XM_034309685.1 mRNA upstream 276256 23905850 ~ 23915499 (+) False fbxl16
XM_026947119.2 mRNA upstream 320956 23846609 ~ 23870799 (+) True gsg1l
XM_034309779.1 mRNA upstream 378120 23810299 ~ 23813635 (+) True si:ch211-76l23.4
XM_026947113.2 mRNA downstream 35746 24365746 ~ 24383894 (+) False mettl22
XM_026947111.2 mRNA downstream 35761 24365761 ~ 24383894 (+) True mettl22
XM_034309896.1 mRNA downstream 55737 24385737 ~ 24418546 (+) True abat
XM_034309897.1 mRNA downstream 59928 24389928 ~ 24418546 (+) False abat
XM_026947091.2 mRNA downstream 199769 24529769 ~ 24539117 (+) True si:ch211-157c3.4
TU255678 other upstream 443688 23742555 ~ 23748067 (+) False igfbp7
XR_004579446.1 other upstream 450771 23731454 ~ 23740984 (+) True LOC113546919
TU255422 other upstream 1021202 23137246 ~ 23170553 (+) True G215621
TU255420 other upstream 1021537 23141752 ~ 23170218 (+) False G215621
TU255140 other upstream 1355853 22835664 ~ 22835902 (+) True G215347
TU256099 other downstream 127070 24457070 ~ 24458004 (+) True G216197
TU256100 other downstream 127070 24457070 ~ 24458004 (+) False G216197
TU256141 other downstream 199679 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256462 other downstream 467254 24797254 ~ 24797678 (+) True G216515
trnai-uau_7 other downstream 1024776 25354776 ~ 25354868 (+) True trnai-uau_7

Expression Profile