RNA id: TU256414



Basic Information


Item Value
RNA id TU256414
length 260
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G216467
representative True

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24706620 ~ 24706879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aaaaaagaaaaatgaaataaacaaaagacacGAGACGGATTAGAGATTGTGACAGGACTCACTCTTTGATGTGCTTGCGGCAGGGTACCGAGTTCCGCATGCAGGTTCCTGTCAGACGTTCCACGTTCTCCACGATGACGAAGGGCTTCTCCTCTAAAGTCACGATGCTCAGGTGATTATCGTCCGTCTCCGTGTCACCGAACGAGTTGAAGCGCGGCCACACCGGGTACTTCAGCGTCAGACTGCGGTTCTCCCATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU256410 lncRNA upstream 11196 24695102 ~ 24695424 (+) True G216463
TU256406 lncRNA upstream 19951 24686438 ~ 24686669 (+) True G216459
TU256164 lncRNA upstream 112003 24565212 ~ 24594617 (+) True G216249
TU256144 lncRNA upstream 118170 24540726 ~ 24588450 (+) True G216230
TU256059 lncRNA upstream 233448 24470059 ~ 24473172 (+) True G216167
TU256435 lncRNA downstream 32082 24738961 ~ 24739655 (+) True G216488
XR_004579447.1 lncRNA downstream 122664 24829543 ~ 24854293 (+) True LOC117599007
TU256530 lncRNA downstream 163239 24870118 ~ 24912805 (+) True G216577
TU256629 lncRNA downstream 318205 25025084 ~ 25025573 (+) True G216652
TU256605 lncRNA downstream 337500 25044379 ~ 25054895 (+) True G216631
XM_026947098.2 mRNA upstream 131159 24569233 ~ 24575461 (+) True c13h16orf72
XM_026947091.2 mRNA upstream 167503 24529769 ~ 24539117 (+) True si:ch211-157c3.4
XM_034310263.1 mRNA upstream 167503 24529797 ~ 24539117 (+) False si:ch211-157c3.4
XM_034309896.1 mRNA upstream 288074 24385737 ~ 24418546 (+) True abat
XM_026947095.2 mRNA downstream 104201 24811080 ~ 24829473 (+) True atf7ip2
XM_026947115.2 mRNA downstream 160521 24867400 ~ 24895480 (+) True nubp1
XM_026947116.2 mRNA downstream 160574 24867453 ~ 24896195 (+) False nubp1
XM_034310275.1 mRNA downstream 192542 24899421 ~ 24920755 (+) False ciita
XM_034310274.1 mRNA downstream 192543 24899422 ~ 24920755 (+) True ciita
TU256141 other upstream 167578 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256099 other upstream 248616 24457070 ~ 24458004 (+) True G216197
TU256100 other upstream 248616 24457070 ~ 24458004 (+) False G216197
XR_004579369.1 other upstream 378660 24191753 ~ 24327960 (+) False rbfox1
TU256462 other downstream 90375 24797254 ~ 24797678 (+) True G216515
trnai-uau_7 other downstream 647897 25354776 ~ 25354868 (+) True trnai-uau_7
trnai-uau_8 other downstream 648621 25355500 ~ 25355592 (+) True trnai-uau_8
TU257298 other downstream 1598568 26305447 ~ 26306767 (+) True ier2a

Expression Profile