RNA id: TU256657


Basic Information

Item Value
RNA id TU256657
length 245
lncRNA type read_through
GC content 0.41
exon number 2
gene id G216675
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25166500 ~ 25189043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATACATAGACACATTGTGTATGggttaaaaaaagtttgttgTTCAGTGTTTATGACGTCATGTTCTTTGCCGTATCACTGCGCCGCCGCTGTGTGttgaatactgtgtgtgtagctgattGTCAGCAGGGTGTGTCTGTTCGGAATATGAGTGAAAACACATTTATGAGCATTTTTAATAGCTGGAAAAGGTGATTGTGAGCCagagtttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256646 lncRNA upstream 8957 25156261 ~ 25157543 (+) True G216668
TU256605 lncRNA upstream 111605 25044379 ~ 25054895 (+) True G216631
TU256629 lncRNA upstream 140927 25025084 ~ 25025573 (+) True G216652
TU256530 lncRNA upstream 253695 24870118 ~ 24912805 (+) True G216577
XR_004579447.1 lncRNA upstream 312207 24829543 ~ 24854293 (+) True LOC117599007
TU256668 lncRNA downstream 41161 25230204 ~ 25230472 (+) True G216686
TU256652 lncRNA downstream 73013 25262056 ~ 25267110 (+) True G216672
TU256812 lncRNA downstream 206579 25395622 ~ 25395883 (+) True G216817
TU257061 lncRNA downstream 607261 25796304 ~ 25890447 (+) True G217035
TU257115 lncRNA downstream 711031 25900074 ~ 25901489 (+) True G217082
XM_034309934.1 mRNA upstream 113342 25035924 ~ 25053158 (+) True rab40c
XM_026947016.2 mRNA upstream 132765 25021269 ~ 25033735 (+) True pigq
XM_034309818.1 mRNA upstream 170734 24923500 ~ 24995766 (+) True clec16a
XM_034310276.1 mRNA upstream 245745 24901558 ~ 24920755 (+) False ciita
XM_026909841.2 mRNA downstream 79821 25268864 ~ 25278367 (+) True c13h17orf75
XM_026909848.2 mRNA downstream 199734 25388777 ~ 25488704 (+) True LOC113523790
XM_026909796.2 mRNA downstream 352688 25541731 ~ 25554972 (+) True prdm1b
XM_034310266.1 mRNA downstream 381268 25570311 ~ 25614308 (+) True LOC113523795
XM_034310269.1 mRNA downstream 427380 25616423 ~ 25626609 (+) True crybg2
TU256462 other upstream 368822 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 627458 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256099 other upstream 708496 24457070 ~ 24458004 (+) True G216197
TU256100 other upstream 708496 24457070 ~ 24458004 (+) False G216197
XR_004579370.1 other upstream 838540 24191753 ~ 24327960 (+) False rbfox1
trnai-uau_7 other downstream 165733 25354776 ~ 25354868 (+) True trnai-uau_7
trnai-uau_8 other downstream 166457 25355500 ~ 25355592 (+) True trnai-uau_8
TU257298 other downstream 1116404 26305447 ~ 26306767 (+) True ier2a

Expression Profile