RNA id: TU257220


Basic Information

Item Value
RNA id TU257220
length 432
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G217170
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 26140577 ~ 26146174 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctctctctctctctctctccctctctctctctccccctctctctctctctctctctctctctctgtgtattttctGAGCTGTAAACATTGCgggtgtaaatgtgtaaaagtaaaaagtgtTGCTCTGGGATCAGTCTTTCTCACATTCCGCTGCTGTACATCACGCTCGTGTCCTGCAGAGGGCGCTGCACTGAGATCAGTGTTGATCAGACGGAGCTACATGGGTTTCAGATGGCCACAGGATCGAGTGCTCACTCTGGACCGGGTCGGGTCGGGTCAAACACTTAGCTGATAAATCATGGTTTCTTTTTAtcaggtgtgtgatgtgtgtgatgttctgaTGGAGAACCCACAGGGCTCTAGAGTGTTTCCTCACTTTGTGTGTACACTGATCATGTAGAACAAAATAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402457.2 lncRNA upstream 53701 26080154 ~ 26086876 (+) True LOC113523785
TU257228 lncRNA upstream 67897 26067748 ~ 26072680 (+) True G217175
TU257115 lncRNA upstream 239088 25900074 ~ 25901489 (+) True G217082
TU257061 lncRNA upstream 250130 25796304 ~ 25890447 (+) True G217035
TU256812 lncRNA upstream 744694 25395622 ~ 25395883 (+) True G216817
TU257268 lncRNA downstream 53091 26199265 ~ 26205038 (+) True G217193
TU257286 lncRNA downstream 97535 26243709 ~ 26247946 (+) True G217211
TU257259 lncRNA downstream 111197 26257371 ~ 26301906 (+) True LOC113523791
TU257266 lncRNA downstream 111197 26257371 ~ 26301906 (+) False LOC113523791
TU257257 lncRNA downstream 124713 26270887 ~ 26301906 (+) False LOC113523791
XM_034309889.1 mRNA upstream 22518 26087441 ~ 26118059 (+) True gtpbp1
XM_034309891.1 mRNA upstream 22518 26087444 ~ 26118059 (+) False gtpbp1
XM_034309890.1 mRNA upstream 22518 26088077 ~ 26118059 (+) False gtpbp1
XM_034309892.1 mRNA upstream 22518 26088077 ~ 26118059 (+) False gtpbp1
XM_026909845.2 mRNA upstream 108315 26028298 ~ 26032262 (+) True LOC113523788
XM_034309823.1 mRNA downstream 138370 26284544 ~ 26296646 (+) False LOC113523791
XM_034309804.1 mRNA downstream 159272 26305446 ~ 26306768 (+) False ier2a
XM_034310106.1 mRNA downstream 164010 26310184 ~ 26321753 (+) False gtf2f1
XM_034310107.1 mRNA downstream 164298 26310472 ~ 26321753 (+) True gtf2f1
XM_034310278.1 mRNA downstream 185559 26331733 ~ 26434252 (+) True cacna1aa
trnai-uau_8 other upstream 784985 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 785709 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 1342899 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1601535 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1682573 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 159273 26305447 ~ 26306767 (+) True ier2a

Expression Profile