RNA id: TU257228


Basic Information

Item Value
RNA id TU257228
length 1616
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G217175
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 26067748 ~ 26072680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtaatgcttttatttatgaaaatatccACTCACATATTACATCTTAAAGACACACATCCATTCAATAAACTGCACAGAACTGAAGGTGACATTTACTGAATTTCAGGACATTTATTagcaatttatttacagtttgtgAATCTTATCATTAACATTTTGATCTCCAGTGTTACCTGCGTTACTCATttgattattacttttattatttttttaaatacaatgcaaatattcatgaaataaaagtgtagaAATGCTGTGATTAGACATTACTCAGCTAGTtaattctgtcattctgtcacaAAAGGACAAGTTGTGCTTTAACGTGTGaataacagaaaacatttcagatcTAGTGCAATACAGTGACACCAAATAATCagtttaaatgtaaaagaaaattcatCTTCATTCATGTGTTCAAGACCAAAGATTTATGaagagaagtgttttattacaaaatttttaaaatactggGGAAATTAAGTGATTCTTTAACAGactctttctggtttctttctATTCAGATCAGcaggagaaaaatgtgaaagaCTGCAGATGATTGGCTACTCTTAACAGGATTGGCATTTTAAGCAAAAGTTTGAGGATTTCAGGATAAAATTGTTGCTCACGCTCACTGCCAGGTCAGTGTTTTGCTAAAATTTGTtctttaaatgtgaaaatgctgCTCTAGAATTTTCCAATTCTTGCCAAATGTTGAGATTCCTTTACACAGATGGTAATGGATCTTCTCCCAGGCCTCCACCTCTGAGCGCCACAGAGCTGATCTGGAGCGAATGAGCTGAGCCACTTCATTTTTGCTCCCTTTGGCCAgactaatactactattacagATGAACAAAACATCTACACCGATAAAGAGGGCATTTAAGCCGATGAACCCTGCCCTGGCTGACTTTGAAAGGGCCAGAGGAGTTCCTTTAGCCACCTGCCCAATGTCAGGAAGATCTGCAGCCAGTTTTGGGATGTTCCGACCTGCTTTAGCTTCATGAAGCCCTAGATTAACTGCCTTTGCAATCACCTCCTCACTTCTGAGAGCTTTTACAGCTGAAACTCCATCCACAATAGCATCAATACCTTTTACTACAGCTCTGGCGCAAATGGCCAGTTTCCCCACTTTAAAGGCTGTGGTGACACCATGAGGAGCTGCTGCTGGACCATCACTGCTGGCCACATCTTCCATGAAATCTAGGATCTTCTGCACGTCTTTCATAAATCTGATGAAGATGTCATTGGCCTTTTCCCCTTGACAATCATTGACTGCCATTTCAGTGATGCCTGTAACGAGGCTGTTGACACCACTGGTGACTCCGAGACCAACGCCTGTGAGTGTGAGGGCCAAAGATACACCTGCAGTGACAGGAGCAAGAGCTAAACCTACGATAGACAAAACACCTCCTGTAGCACCGACTGAACTTCCAGCTACAGTGGAGATGTTGGAGCCCTTCTTCATCTTGTCCAGCTGAACTGCAGCCTTCTCTAAATCAGACAGGTACTGAAGCATTCTCGGGCGGCGCTCactgaataaattaatgaagtgCTGTGAGTTTGCACCAAATAGGAACGTCAGCCTGAAGGACTCGTCCATCCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257115 lncRNA upstream 166259 25900074 ~ 25901489 (+) True G217082
TU257061 lncRNA upstream 177301 25796304 ~ 25890447 (+) True G217035
TU256812 lncRNA upstream 671865 25395622 ~ 25395883 (+) True G216817
TU256652 lncRNA upstream 800638 25262056 ~ 25267110 (+) True G216672
TU256668 lncRNA upstream 837276 25230204 ~ 25230472 (+) True G216686
XR_003402457.2 lncRNA downstream 7474 26080154 ~ 26086876 (+) True LOC113523785
TU257220 lncRNA downstream 67897 26140577 ~ 26146174 (+) True G217170
TU257268 lncRNA downstream 126585 26199265 ~ 26205038 (+) True G217193
TU257286 lncRNA downstream 171029 26243709 ~ 26247946 (+) True G217211
TU257259 lncRNA downstream 184691 26257371 ~ 26301906 (+) True LOC113523791
XM_026909845.2 mRNA upstream 35486 26028298 ~ 26032262 (+) True LOC113523788
XM_034309787.1 mRNA upstream 60051 25986792 ~ 26007697 (+) True LOC113523768
XM_034309788.1 mRNA upstream 60051 26003952 ~ 26007697 (+) False LOC113523768
XM_034310223.1 mRNA upstream 94782 25956766 ~ 25972966 (+) True rac2
XM_034309670.1 mRNA upstream 129523 25931431 ~ 25938225 (+) True LOC113523801
XM_034309889.1 mRNA downstream 14761 26087441 ~ 26118059 (+) True gtpbp1
XM_034309891.1 mRNA downstream 14764 26087444 ~ 26118059 (+) False gtpbp1
XM_034309890.1 mRNA downstream 15397 26088077 ~ 26118059 (+) False gtpbp1
XM_034309892.1 mRNA downstream 15397 26088077 ~ 26118059 (+) False gtpbp1
XM_034310131.1 mRNA downstream 48354 26121034 ~ 26145128 (+) False sgsm3
trnai-uau_8 other upstream 712156 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 712880 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 1270070 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1528706 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1609744 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 232767 26305447 ~ 26306767 (+) True ier2a

Expression Profile