RNA id: XM_026909796.2


Basic Information

Item Value
RNA id XM_026909796.2
length 3469
RNA type mRNA
GC content 0.48
exon number 7
gene id prdm1b
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25541731 ~ 25554972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacttGCATTCACATTGTCTGAGAAAAGGACAGCGTTACGGTTGAGCTGGCACTACCGTCGTCCCAATTGGATCTTCTCAGACTAATcctgagagtcacatgaccactgGGATTTCCCGATTGGATGGTCACGGACGCTCAAAAGCCTGGCACGAGTGAGATGCTGACAGTTACAGTGgcaaagaggaagaaaaaaaaaacgactagAAAGGAATTGGATTTGGGAAGTGAAGGAAAAATTGAGGATGTGTATGTGACTGAAGAAGAGAGAGGAACAAGGAATGATGTAACCAAAGAAATGAAGATTGAGCAACTGAATGAGTGTCAAttttatcacAGAAAGCTAAGAGAAGAACCTCTGCCGCCAAGAACCACAGCAGGCCGAGCGAACCAAACCCAGCCTGAGGGGGAGCGCGTGAATCAGGAAACAGAGGACGAGATGAAGCAGGAGTCGTGTCTCAGGAACATGAGCGAGTGGCGTGAGGTGGATTTCGCTCTCAGCTGCACCTACATCGTCCACGACCAGCCGTTTGAGCCTGGCTTCACCCTTCCCAGAGCCATGAGCTCCATCCCAAGCAACCTCACCTTCCACTACGGCTCTGACAACGAGGTGACAGGTGTTTTCAGTAAGGAGTACCTCCCCCAGGGCACACGCTTCGGCCCCCTGCAGGGTGAGATTTACGCCAAAGACGAGGTGCCGCCCCATGCCAACAGGAAATATTTTTGGAGGATTTACTCCGGCGGGCAGCTCCACCACTTTATTGATGGATATGACGTGCAGCGCAGCAACTGGATGCGTTTCGTCAACCCGGCGCATTCCCTGGCCGAGCAGAACCTGGTGGCCTGTCAGAATGGACGTGATGTCTTCTTCTACGCCATCAGGCCCGTGGAGCCCCGGCGCGAGCTGCTCGTGTGGTACAGTCCGGAGTTCTCGAGGAGACTGTCTGGACACGCAGAAGAGCAAACAGACAGTGTGAAGCCAAAGCACTTTGGTGGTGATGTGATTGAAGCTGACCTCCAGAAGCACTGCCTACCTCAGTGGACCTGCCATCCCAAACAGGCTTCACTCCCTTACAGCCTACACAGTCAGGAAGAGGTAACAAAGGAAGGAAAGGATGAATTTGAGGAAGCTGAGGAGAAGATTGACGTGGAGGCCATTGAGCAGGACACGCCACCCAGCACTCCAGATCAGCACTTGATGGACTCCAGTAAGAAGTTTCCCCAGGAAAGCACAAACAAATCACATCCTAAGCTTGTTTCCCAGCCGTGCCCTGACCGAGTCCTTCCACTGCATCCTCAGAGCTATTACAGCCCCAGGGAAGACTTGTCACCGTACCCTGCTCTGCCACACCCCTACCATTTTTTGCCTTCATTTGACCCTCATTATCCCCAACTCATTCTAAGCCCTTACTCCCCTTCCATCCCTGCTATTCCACCCCCCAGAGGACCATTCCACTACAGCAATGTGCTGGCAAGTGACGCCTTGCCCTTTTCAGCCATGACTCCACCAGGCCCACTCCCTGTTAATCTTCCTTATCCTGCCCTACATCCTCGTACCAGCCTGGAAGCGCGGTCTGCGAATACATCACCTCCCCAGGGTGCCCCGGCCACCCCGGAGCTCTCCCCTCTCATGAATCACTCCTCAGGGTCTGAGGAAGCCATCAACCTCAGCTTGGCTGCTACACCAAAGATGAGCtctatgacatcatcatcatcatcatcatcatcatcatcatattcgGTGTCACCGCAAGGTCCAGGGTACAAGTCCCTGCCGTACCCACTAAAGAAACAGAATGGAAAGATCAAGTACGAGTGCAACGTCTGCTTCAAGACCTTCGGCCAGCTGTCCAACCTGAAGgtgcacttgaGGGTCCACAATGGAGAGAGGCCATTTCAGTGTCCGTTGTGCCAGAAGAGCTTTACCCAGCTGGCACACCTACAGAAACATCATCTTGTCCACACTGGAGAGAAACCTCATGAGTGTCAGGTGTGCCAGAAACGTTTTAGCAGCACCAGCAACCTGAAGACTCACCTGCGCTTACACTCGGGAGAGAAGCCCTACCAGTGCAAAGTGTGCGGCACCAAGTTCACGCAATACATCCACCTGAAGCTGCACCGCCGCATGCACAGCTCAAGCGAGCGACCACATTGCTGCCCGTTGTGCCACCGTGGCTTCCTCCATCACTTTTCCCTCAGGCTGCACCGTCGCTCTGGATGTTGCACCACCAATTCCCTGCCTGAAAGCCCCGAGATGAAGTACACCGCTGAGATCCTCGAGCGATTTGATGTCAGCGCCGAGGCGGAAGCTCTCGCAGAGAATTCATCAGAGACCGAAGTCAGTGCCGCTCTGGAGAGGTGGCTGGACCTGGACGATCGACCCAAACCCAGCCACTTCAAAGCCTCGGACTTTGACCTGCTGAAAACCTCAGGACTGGGGCAATGGCAGGAGAGGGCCAGCGTGGTGCGCTTCGGTGGTGAAGGAAGAGTACAGTGAGGAAGAAAAGGGAAGGATGTTTAAACTCCAGTTCCAGAAGTAGTCTAAAAATCACCTATGCTTGCGTGTAGTAGTCTATGCCAAAAAAATATCCTGAGAGGATGAGAGCTAAACCAAGCCAAGCAgcaccaaaataaataaatagcatttcCAAAGACTTAATAATTGCACTTAAGCCTTCTGTTCTTTGGCAGAGAGTGAAGGCGACCAGTTACATCCTTGtacttgtgttttcttttgtttcgtTTAGTGTGTTTCTGAGctcatattaatttattactcTCAGTActatttgtgtttggttttagaaatgtgtaaaatgtcatttttgtacATGGttgtttggaattttttttgctgttgtttggaaattaataatattgatttttttctcagGACATGTTGATAATCAGGGTATGGAATTCTTaacaaaagatatcagggttttgttgtgtgaatgttttcCGAGTATACCGTTTCTCAgcaccctcactgtaacccaAGGTATAAGAAATTCTGCAAATAGTTATGCAATGTTTGATTTGCAATCATTTTAGATCTTACTTCTTTAAAGAGAAGTCAAACTtccactttattatttattatttagagaagtccttttttttgttttctgtataattcagtaattcagtcGTCCAACACTGACCTGAACTTTTGGTGTATTTTCTTGAGCACCAGATCCCCAGCAGGAACTGAAGTTATTGTTAATCTCAGGACAGATCAGGTGTAATTTATTACTATGctctttgttttaatttattaaacattagcaCTGGAAAAAGCAGGATCTCGATCCATGTGCACAGTTACTGTTACGTAGCGATGACAAGAATTTGTTTACTGATCGTCTTTGTTTTTCATGTAGGATTTTTGTACAGTTTTGTTTACTCAGCTATTTTGGATGTTGATACTTTATATGTCAGAGTTTATTTTCACTGAACTTTTGTAATG

Function

GO: NA

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256812 lncRNA upstream 145848 25395622 ~ 25395883 (+) True G216817
TU256652 lncRNA upstream 274621 25262056 ~ 25267110 (+) True G216672
TU256668 lncRNA upstream 311259 25230204 ~ 25230472 (+) True G216686
TU256657 lncRNA upstream 352688 25166500 ~ 25189043 (+) True G216675
TU256656 lncRNA upstream 356329 25157680 ~ 25185402 (+) True G216674
TU257061 lncRNA downstream 241332 25796304 ~ 25890447 (+) True G217035
TU257115 lncRNA downstream 345102 25900074 ~ 25901489 (+) True G217082
TU257228 lncRNA downstream 512776 26067748 ~ 26072680 (+) True G217175
XR_003402457.2 lncRNA downstream 525182 26080154 ~ 26086876 (+) True LOC113523785
TU257220 lncRNA downstream 585605 26140577 ~ 26146174 (+) True G217170
XM_026909848.2 mRNA upstream 53027 25388777 ~ 25488704 (+) True LOC113523790
XM_026909841.2 mRNA upstream 263364 25268864 ~ 25278367 (+) True c13h17orf75
XM_026909867.2 mRNA upstream 320458 25155536 ~ 25221273 (+) True xylt1
XM_034309934.1 mRNA upstream 488573 25035924 ~ 25053158 (+) True rab40c
XM_026947016.2 mRNA upstream 507996 25021269 ~ 25033735 (+) True pigq
XM_034310266.1 mRNA downstream 15339 25570311 ~ 25614308 (+) True LOC113523795
XM_034310269.1 mRNA downstream 61451 25616423 ~ 25626609 (+) True crybg2
XM_026909798.2 mRNA downstream 74389 25629361 ~ 25641443 (+) True zgc:101785
XM_026909800.2 mRNA downstream 74572 25629544 ~ 25641443 (+) False zgc:101785
XM_034310267.1 mRNA downstream 120950 25675922 ~ 25683612 (+) True sgo1
trnai-uau_8 other upstream 186139 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 186863 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 744053 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1002689 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1083727 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 750475 26305447 ~ 26306767 (+) True ier2a

Expression Profile