RNA id: XM_026909858.2



Basic Information


Item Value
RNA id XM_026909858.2
length 1435
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC113523792
representative False

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25910682 ~ 25922856 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CGCGCGCCGTATTTGGAACACAAGCGCGTGCTGGCTGATGCGCGCTCCCGCACCTCGCAGTTGTTCGCGTCTCAGGCGCGCGCGGGCGGAGAGTGGCACAGCAGGATCTTCCCTCGCTCCCTCGTCCCCTTGCTCCCTTGTTCCCTCCCTCCCTCGTCCCCTCGCTTTGTGGCCATGGAGGCTCGAGGAAAATTTGATTTCAACGCCACGGCGGAGGACGAGCTCAGCTTTCGCAAAGGAGACACCCTGAAGATCCTCAGCACTCAGGATGACTGGTTCAAAGCAGAAATGCACGGACACGAAGGATTCGTCCCTAAAAACTACGTGGACAGACAGATACCCAGCTGGTTCCAGGAGAACGCCAGCCGCGGCGCTGCAGAGGAAATTCTCATGTCCCGGGAGGTCGGAGGCTTCCTGATCCGCGGCAGTCAGAGCTCACCTGGAGATTTCTCCATCTCCGTCAGACACGAGTTTGACGTGCAACATTTTAAGGTGATGAAGGACAATAGAGGTCATTATTACCTGTGGAGCGAGAAGTTCACGTCCCTCAACAAGCTGGTGGACTTTTACAGAACATCATCCATCTCCAAACAGAGGGAGATCTTCCTGAGAGACGGGAGCCGAGATGAACTGAGAGACCCGGCACCTCATccggtaAAGAGAAACAATCTGGACGAGCGACCCCAACCTTCTGCTTCAGCACCCCGCAGACCAACAGAGCAAACTCACACTCAGCagAATAAGCGAGGAAGTTTGGAGGAGAGAGCTCACCCCATGGGTCCTGCAGGCAGGAACAGTCCTGTTAGTACTCTTCCAACATCCAGACGCGCTTCTGAAGTCATACCTGcaccgAGGCCGGCTGTACAGGTGAAGGCTCTGTACGACTTCATGGCAGAGGAAGACGACGAGTTGGGCTTCAACACCGGTGACATCATTGAGGTTCTGGATCGTTCCGATGCGTCGTGGTGGAGAGGACGCCTGCGCGGGAACGTCGGACTTTTCCCTGCTAACTACACGGCTCAGATATAAACCACCCGGAGAACCGGTTCTTCTGCGGTGCTTTTCACTTCAAGTCGGATCTTTTCCTTTCATCACTGATTACGAGGACGAGGACAGGATAATGACGTTAATTGTCATTAATTGGATTAATTGGATTAATTACAGAATTATGATTAGTGTGAGGTACGATTCCGTCTCAGTCGAGACCCGACACACGGACGGGAATGCATTCCTATTCCTGCTTTTCCACTGAGTAATGTACATCGCTGTTCCTCAATCCTGCTCCTGATTAAATGCtgagtttatatttaatattcagtttatTATAACTGACATCAGAGCCGTGATTAATCCTTTTCATCAGGCAGCCTATAAAACACAACTTTTTCCCCTGAAGCTTGtaaaacagattattttttaattttctccccctttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257115 lncRNA upstream 9193 25900074 ~ 25901489 (+) True G217082
TU257061 lncRNA upstream 20235 25796304 ~ 25890447 (+) True G217035
TU256812 lncRNA upstream 514799 25395622 ~ 25395883 (+) True G216817
TU256652 lncRNA upstream 643572 25262056 ~ 25267110 (+) True G216672
TU256668 lncRNA upstream 680210 25230204 ~ 25230472 (+) True G216686
TU257228 lncRNA downstream 144892 26067748 ~ 26072680 (+) True G217175
XR_003402457.2 lncRNA downstream 157298 26080154 ~ 26086876 (+) True LOC113523785
TU257220 lncRNA downstream 217721 26140577 ~ 26146174 (+) True G217170
TU257268 lncRNA downstream 276409 26199265 ~ 26205038 (+) True G217193
TU257286 lncRNA downstream 320853 26243709 ~ 26247946 (+) True G217211
XM_026909793.2 mRNA upstream 193543 25711195 ~ 25717139 (+) True LOC113523761
XM_034309801.1 mRNA upstream 200578 25706864 ~ 25710104 (+) True LOC113523775
XM_034309800.1 mRNA upstream 205745 25696382 ~ 25704937 (+) True LOC113523776
XM_034310267.1 mRNA upstream 227070 25675922 ~ 25683612 (+) True sgo1
XM_034310268.1 mRNA upstream 227070 25675922 ~ 25683612 (+) False sgo1
XM_034309670.1 mRNA downstream 8575 25931431 ~ 25938225 (+) True LOC113523801
XM_034310223.1 mRNA downstream 33910 25956766 ~ 25972966 (+) True rac2
XM_034309787.1 mRNA downstream 63936 25986792 ~ 26007697 (+) True LOC113523768
XM_034309788.1 mRNA downstream 81096 26003952 ~ 26007697 (+) False LOC113523768
XM_026909845.2 mRNA downstream 105442 26028298 ~ 26032262 (+) True LOC113523788
trnai-uau_8 other upstream 555090 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 555814 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 1113004 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1371640 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1452678 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 382591 26305447 ~ 26306767 (+) True ier2a

Expression Profile