RNA id: XM_026909867.2


Basic Information

Item Value
RNA id XM_026909867.2
length 3247
RNA type mRNA
GC content 0.57
exon number 11
gene id xylt1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25155536 ~ 25221273 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctttctctctctctatctctctctctctctctgtctctctctctctctctctcactgcgcGCGCTGACTCCACATAGCCCCGTAGCCCGGTGTCGGTGGCGCACGGCGGTGCTGCTCGCTCAGCTCGGCTGCTTCACACGGACGCACGCGCAAAGGGAGGggaaaggaaacaaacaaaccaaaaccaaaccaaaccaaagcaTGATGGTCGGCGGTCCGTGCGCGCGCAAGTCGGCTCGCCGCTCGCGCTCCGCGCTGATCGCCGCGCTCACCGTGCTGCTCGTGCAGACGCTCATCGTGTGGAACTTCAGCAGCCTGGACTCGGGGGACGCCGGGGAGAACGGCggaggagctggagctggaggtgGCGCTGGAGGTGCTGGAGGCGGAGGCAGGGAGAAGAGAGACCGGCTCGGTGTCAACAAAGCGTACGGCGAGTATCCGAGAAGCAGGAGGCAGCAGCTCGGGAAGGCGACCCTGCGCCACAAGCGGCAACCGGACGTCTACTACTCACATCGTCCCAAGGAGAAGGTCCGTGTGGACAGCAACAACGAGAACTCTGTGCCCAAAGACTTCGAGAGCATCGACAACAGTAACTTCGTGGCGCGTCGCGCCTCCAACAAGCGGCAGCAGGAGACGCCCGAGAAGGCCAAGAGCTCCAATGAGCTTGTCCACTATGGCCTGAATCGCACGGAGGCGGGGCTCCGTCATGACTCCGCCCTCACGCCGCTCCCTCCACGGCATCGCCACCAACAGGTCAAGCCATCGGCCGTTGCCACGCCTGATATCAAATATGACCAGCCGCCCAAATGCGAGATCACAGGCAAGGAGGCGATCTCGGCTCTGTCGCGCGCTAAAACCAAGGAGTGCAGACAGCAGATCGCCGAGGTGTACTGTCGACACAAAGACAAGCAGCTCATGCCTGAGAAAGTCACTCGCTACTGCCCCCTAGAGGgtaaggCGAGTGTGAACGTGCACTGGGAGGAGGACTCCATGGAGACGGTGCCGGCTGTACCTGTGCGTATCGCCTTCGTGCTGGTGGTCCACGGCCGAGCATCGCGCCAAGTGCAGCGTCTCTTCAAGGCCATTTACCACACGTCACACTTCTACTACATCCACGTGGACCAGCGCTCAGACTACCTCCACAGGCAGATGCTAGCGCTGGCTAAGCGCTACCCGAACGTCCGTGTGACGCCCTGGCGCATGTCGACCATCTGGGGCGGAGCCAGTCTTCTCAGCATGTACCTGCAGAGCATGAAGGACCTTCTGGCCATGAGCCACTGGCCCTGGGACTTCTTCATCAACCTGAGCGCTGCAGACTACCCCATCAGGACTAATGATCAGCTGGTGGCTTTCCTTTCCAAGTACCGCAACATGAACTTCATCAAGTCTCATGGGAGAGATAACGCTCGATTCATCAGAAAACAGGGCCTGGACCGGCTCTTCTTCGAGTGTGACACACACATGTGGCGTCTGGGGGACAGGAAGATTCCGGAAGGCATCGCGGTGGACGGAGGCTCTGATTGGTTCCTGCTGAACCGCGCCTTCGTGGAGTACATCATCAACTCCGATGACGACCTGGTGACCAGCATGAAGCGCTTCTACGCTTACACTCTCTTGCCAGCCGAGTCGTTTTTCCACACGGTGCTGGAGAACAGTCCTCACTGCGAGAGCATGGTGGACAACAACCTGCGTATCACCAACTGGAACCGGAAACTGGGCTGCAAGTGCCAGTATAAGCACATCGTGGACTGGTGTGGCTGCTCGCCCAACGACTTCAAACCCTCTGACCTGCCCCGCTTTCAGcAAACGGCACGGCCCACGTTCTTTGCGCGCAAGTTTGAGGCCAGCGTGAATCAGGAGATCGTGAATCAGCTGGATGCCTTCCTGTTTGGAAGCTATCCTCAAGGCACGCCAGGACTCAAAGCCTACTGGGAGAACATTTATGATGAACCTGATGGTGTCCACAGCCTGAGTGATGCCCTGCTCACCCACTACCATGCGTTCGCCCGCCTCGGCCTGGCACGAGCCGCCAACTCCCTGCAAGGAGACGCCAGCGACAACCGTTGTAGGTACTATGCTATGGGGCATCCTGTGGCTGTCCATATCTACTTCCTATTTGATGAGTTCCAGGGTTACCTGGTGAAGCATCACGCCACCAATCTGGCTACCAGCAAGCTGGAAACTCTGGAGACCTGGGTGATGCCTAAGAAGTTCTTCAAATTCACCAACCCACCAAGCAACTTCAACAGACTGCAGTTTGCCGAGATTGGGACAGACTGGGATGCTAAGGAGAGAATCTTCCGCAATTTTGGTAATCTCATGGGGCCTATGGACGAGCCGGTGGGGATGCAGAAGTGGGCCAAAGGGTCCAATGTGACAGTGACGGTGGTGTGGATTGACCCCACTAACGTGATCGCAGCCACCTACGACGTCTTGATCGACTCCACTGCCGAGTTCACACACTACAGGCCTCCGCTGAACACACCACTGCGGCCCGGCATGTGGACTGTCCGAGTGCTGCACCACTGGAACCCCGTGGCCGAGACACGCTTCCTCGTCACACCGCTTACACACCATAAACACCTGCCCATCCGCCAAGACGACGCCTTGAAAGTGCACAACGGCCCAGCCAAGAACAGCTACATGGAGCAGAGCTTCCACGGGCTGAACCCCATCCTGAACATCCCGGTGCATTTGGGCCAGGTGGAGGAGGCGGAGCATAATGCCGGGCTGACGGGTATGAGGTTGGAGCGCTGGGTGGACAGCCTGGTTGGCGAGGTGTGGGCAGCTGCGGACGTTTGCTCGGCGACGCCCTCTGGCTGTCCCGTCCTGCAGTCGTGCAGAGATACGGCATGGAGCTCGCTCAGCCCCGACCCCAAATCACAGCTCGGGCCTCCCAAAGCTAACGGCACCATAAGGTAGCAGGAACGCTACCGCTGCCCTGCATCTCCTGCTGCATCGCCATCGTTGTGCTGTTgaaattttttgttatttatttcttttaacattGCTCAGACGAATCTGAGCTGTTCGGGGTGAGACAGCGTACactgaggaattttttttaacacagatcTTTATGAAGTGCTGTTTTAGACTCACAGTCATATGAGTGCAATTGAgcttttttctatttatttaggTTTGAGAGTTGAAACAACTGTGATCaaaatttttgttaaacttgatcaaaaaaaaaaagaaaattaagatGCCTTTTGCATGGACTTTGCTGGGGACATT

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256605 lncRNA upstream 100641 25044379 ~ 25054895 (+) True G216631
TU256629 lncRNA upstream 129963 25025084 ~ 25025573 (+) True G216652
TU256530 lncRNA upstream 242731 24870118 ~ 24912805 (+) True G216577
XR_004579447.1 lncRNA upstream 301243 24829543 ~ 24854293 (+) True LOC117599007
TU256435 lncRNA upstream 415881 24738961 ~ 24739655 (+) True G216488
TU256668 lncRNA downstream 8931 25230204 ~ 25230472 (+) True G216686
TU256652 lncRNA downstream 40783 25262056 ~ 25267110 (+) True G216672
TU256812 lncRNA downstream 174349 25395622 ~ 25395883 (+) True G216817
TU257061 lncRNA downstream 575031 25796304 ~ 25890447 (+) True G217035
TU257115 lncRNA downstream 678801 25900074 ~ 25901489 (+) True G217082
XM_034309934.1 mRNA upstream 102378 25035924 ~ 25053158 (+) True rab40c
XM_026947016.2 mRNA upstream 121801 25021269 ~ 25033735 (+) True pigq
XM_034309818.1 mRNA upstream 159770 24923500 ~ 24995766 (+) True clec16a
XM_034310274.1 mRNA upstream 234781 24899422 ~ 24920755 (+) True ciita
XM_026909841.2 mRNA downstream 47591 25268864 ~ 25278367 (+) True c13h17orf75
XM_026909848.2 mRNA downstream 167504 25388777 ~ 25488704 (+) True LOC113523790
XM_026909796.2 mRNA downstream 320458 25541731 ~ 25554972 (+) True prdm1b
XM_034310266.1 mRNA downstream 349038 25570311 ~ 25614308 (+) True LOC113523795
XM_034310269.1 mRNA downstream 395150 25616423 ~ 25626609 (+) True crybg2
TU256462 other upstream 357858 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 616494 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256099 other upstream 697532 24457070 ~ 24458004 (+) True G216197
TU256100 other upstream 697532 24457070 ~ 24458004 (+) False G216197
XR_004579370.1 other upstream 827576 24191753 ~ 24327960 (+) False rbfox1
trnai-uau_7 other downstream 133503 25354776 ~ 25354868 (+) True trnai-uau_7
trnai-uau_8 other downstream 134227 25355500 ~ 25355592 (+) True trnai-uau_8
TU257298 other downstream 1084174 26305447 ~ 26306767 (+) True ier2a

Expression Profile