RNA id: XM_026911406.2


Basic Information

Item Value
RNA id XM_026911406.2
length 1483
RNA type mRNA
GC content 0.49
exon number 8
gene id tspan4b
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 622345 ~ 630711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggagggccTTTAACTACATCTGGAACTTATTGggaacagatagagagagagggagggagagaaagagagaataagtGCGAGAAGAATGAAAGATCAACAATGTGTTTGAGTTTGGAATAAAAAGTTGCCTGCTCTGGCCATGGAAAAGCTGGAGTCTCgtttttaaaacaaaggaaGGACTTTTAAAAAGAGCTGAAGGAGGGAACAAGTCCAGGAAAAGAACCGAGGAACCGAAGAGCATCAGAGCCCCAACACTGAACAAACTCATCATCCCATCTGCTGGCATCTGGCGCAGACCAACGACGACAATCTGGACTGAAATCACCCGAGATTGCAGACATATTCCTGAAAGATTCCTGGAAACGTTCCGAGTTTTTCTTCCCGAGTTCCCGTCtgcactcctcctcctcctcctcctcctcctccagcagGATGGCCGTGTCCCGAGGCTGCCTGTGCTGCGTCAAATACCTCATGTTCATCTTCAACCTCATCTTCTGGTTgggtgggtgtggcctgtttgGCGTAGGGGTGTGGCTTTCCTTCCGCCAGTCTGATATGTCGTACCTCCCGCTGTCGTTCCCGTCGCTCTCCGTGGCCAACCTGCTGCTGATTGCCGGGGGCGTTACCATGGTGACAGGGTTCCTGGGCTGTCTGGGGGCTCTGAAGGAGCAGCGGTGTCTGCTGATGACGTTTTTCGTGATCCTCCTGCTTCTGTTCCTGACTGAAGCGGCGCTCGTCCTCATGCTGGGGCTCTTCCACAAAGAGCTGGACCAAAAAGCAAAGGAGGACCTGATTGAGGGAATGAAGGATTATGACACCAACCCCCATCTGAAGAGCTCCTGGGACAGTATGCAGAAAATCTTTAAATGCTGCGGCGTGAGCAACCACACTGACTGGTACAACCGGACGACGGAGGGACCGCCCCCTGAGTCCTGCTGCAGAGACCACACCCCTCCCTGTCACCGTTGGgaagagccGTGTTATGAGAAGGCAAAGGCGTGGGTTCTGGACAACATCACCTGGGTCCTGGGTTTCGGAGTGTGTCTCGGCATCGTGCAGATCCTGGCTCTGGCCTTCTCCATGCTGATGTACTGCCAAATCCTGCGAGTGGAAAAGTACATGGACTGATCCTGCAGATTAATAACAGAGAAGAGAATTTCACTCTCTCAGGACGTCCAAATTCAACAAAACCGTGTTTTACAgtctttttaaattcatttacgTCCAACAGGTTTTTCAGCTGAACTTTTCTGCCTGTGCATAAAGTTTATTAAAGTCGATTTCCATGCAGTTGTAAAAGTCCAGGCAGGTGAAGCGGTTTACTCTAATACTGCACATTTTAGTCATTAATAAACAGCGTGTATTGATCACATGTATGACTTTAATTATGTTGAGAGTGATGTTGAAGAGGAGGTTAAAGATTGTCTATGCTCTGTAGATTGTTGTTTTACTGTCTAATAAAGTGTTATCAAATATTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06497 CD63, MLA1, TSPAN30; CD63 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579336.1 lncRNA downstream 55547 551404 ~ 566798 (-) True LOC117598763
TU240717 lncRNA downstream 72634 549463 ~ 549711 (-) True G203271
TU240714 lncRNA downstream 88762 533292 ~ 533583 (-) True G203268
TU240706 lncRNA downstream 116433 505316 ~ 505912 (-) True G203261
TU240677 lncRNA downstream 132614 486309 ~ 489731 (-) True G203254
TU240908 lncRNA upstream 34827 665538 ~ 669489 (-) True G203425
TU240973 lncRNA upstream 62788 693499 ~ 693886 (-) True G203471
TU240956 lncRNA upstream 89378 720089 ~ 763924 (-) True G203458
TU240954 lncRNA upstream 98100 728811 ~ 738745 (-) True G203456
TU240988 lncRNA upstream 107158 737869 ~ 745841 (-) True G203486
XM_034310149.1 mRNA downstream 8159 611190 ~ 614186 (-) True LOC113525013
XM_026911421.2 mRNA downstream 105395 512361 ~ 516950 (-) True rcn3
XM_034309748.1 mRNA downstream 105737 512361 ~ 516608 (-) False rcn3
XM_034309749.1 mRNA downstream 106541 507370 ~ 515804 (-) False rcn3
XM_034310146.1 mRNA downstream 205770 405926 ~ 416575 (-) True si:ch211-195b15.7
XM_034309740.1 mRNA upstream 4973 635684 ~ 639207 (-) True si:ch73-248e21.7
XM_034309729.1 mRNA upstream 11798 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309730.1 mRNA upstream 11798 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_026911438.2 mRNA upstream 11798 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309731.1 mRNA upstream 11798 642509 ~ 644586 (-) True si:ch73-248e21.5
TU240668 other downstream 132614 486222 ~ 489731 (-) False G203254
TU240540 other downstream 288701 331541 ~ 333644 (-) True G203154
TU240560 other downstream 459761 162126 ~ 162584 (-) True G203170
TU240322 other downstream 568070 37599 ~ 54275 (-) False aldh16a1
TU240992 other upstream 110533 741244 ~ 750799 (-) True G203488
TU240994 other upstream 110686 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 111982 742693 ~ 749361 (-) False G203488
TU241063 other upstream 279406 910117 ~ 911228 (-) True G203544
TU241084 other upstream 414026 1044737 ~ 1046555 (-) False si:dkey-66i24.7

Expression Profile