RNA id: XM_026911408.2


Basic Information

Item Value
RNA id XM_026911408.2
length 2091
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC113524995
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 555289 ~ 563409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTCAGCAAGAGCAGCTGCTGAACCGCAGTGACTAAcgACATTTTCCTGGTGTCCAGCCTCCAACAGGAAAGAAAGTGTGGATACGGGGGAACTGGACATACAACAAATCCAACCATGTTGCAGGCACTTCTGATTTGGGCTGTATTTGCTGCAAATCTCCCTTCCCCAACCAGCCAGGGTTGTTTCAATGTGAGTGAGTCTCAATGTCACAATGTGGACTTTGCTCCCGGATCCAACCTGGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTCGCCCTCGACATGAGCTCCTGGCTCCAGAAGGACAAGTCCTGTACTCTGTGTAAAAACCCCTACATGGGAGGTCAAATGCAGAAGCTCCCGGTTTCTGTGGTGGACTGGAGACCGAGTCAGAGGTGCAGAATGAAATTGTCCAGCTCCATCTACCAGTCCAGCGAGGACCTGGTCACTGCCAGCACCTCTTCTATTGAGAACAACTGGAAAGTAGGCTTGCACATAATGACTCCAAAAGTCCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCTGAATATTCAATGGAGAAAACCAAAAAAGACAGGTTCAGCTTCACCAGCCATGCTGTCTCATGTGGATATTACAGTTACAGGGTTTCGAGCCGTCCACCCTTGCACCCAGAACTAATTAATGAATTCGGAAGTCTCCCTGAGATATATAATGAGTCTACAAAGTACCACTATTTCAAGATGATTGACAAGTTTGGAACTCATTATATCACAAAGGTGACTCTAGGTGGAGAGGTTCGCTCTGTGACCAGCATCAGGGAATGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGACATGTCTGGACGTGGAGGCTTCTGTCAGTATAGGAATAGCTGCAAGCCTGAATCCCAAGGCTCAACAGTGCCAGCAGGCCACGGACAGGACTCTGAGCAAAAAGAGCTTTGCTAGCAGCTTCAGAGACAGGGAAACATATGTGATGGGTGGCTACACTCGGAGTGTCGACCTCCTTTTCTCATCAAATAATGACCCAGAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTTGAGCCCCTTCACGAGTTGCTGCCAGAGAAAAACCCAATCCGAGAGCATTTGCTCAATGCTATCAAGGACTACATCCTACAGAGGGCTCTGTTGAAAAGCGATACAAACCCATGTAAGAACAGTGCATACTCCGAGGAACCGTGCAGCTGCCACAACAAACCGGGTGTGGCCCCCAACTGCTGCCCCACTAAGAAAGGATATGCAGAGATCACCGTAACTGTGGTTGGAGCCACGGGTTTATATGGAGATTACTTCCATAAGACAGATGCATTCGTGAAGCTTCTGTGGGAAGATGGAACCATCCATGGCCAGACGTCCGTGATCAAAGAAAACAACTCGCCCAAATGGAACCACAAGTTCCCTCTTGGAACTGTGGACCTTACTCAGGTCAGCAGTGTGAAGCTGGAGGTGTGGGATGAGGATGGTAATTTAAAATATGACCTTCTTGGGGTATGTAAAGTTCTACTGAAATCTGGAAAAAATCTGGACTGTTCCCTCAATCATGGAAGGCTGTATTATAATGTGGAAGTAAAGTGTATTGACGGATTGGCTGGTTCTTTGTGCACTGTGTACAAGCCCTTTGCCATGGAGGCACAGCTGGAGAAAACATACGTCTCCCGGAATGCTCGCCCGATTCCCAAAAGCATGCTGCTGCAGATGGGAGTGCTCCTCGATGCAAGCCTTCACAACCAGAGCAACATTTGCAAAGCTACAGGTCTTGAGTTGCTCATTTGTACTGCCTTTTGCCTTTTTGGAAGCTTACTAAAAGTATCATGAAGCAAAGTCTTGCTACAGTTATGTAGTTTGTAAATTGCATATTCATGGCAGCTACTATAATGTTTAACATAGAATATCTGCATTTAGTATTGGTGTATTATTACTATCTACTTTTAGTGCTCATTTGTGCTGCAACTGTCTTTTTTTCAAAGCCTAATAAAAGTATCATGAAGCaaaata

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240718 lncRNA upstream 1346 553721 ~ 553946 (+) True G203272
TU240522 lncRNA upstream 23674 531387 ~ 531618 (+) True G203141
TU240514 lncRNA upstream 39404 513589 ~ 515888 (+) True G203135
TU240501 lncRNA upstream 42547 509919 ~ 512745 (+) False G203134
TU240727 lncRNA downstream 23180 586589 ~ 586882 (+) True G203277
TU240735 lncRNA downstream 31769 595178 ~ 598723 (+) True G203281
TU240732 lncRNA downstream 47295 610704 ~ 612555 (+) True G203278
TU240750 lncRNA downstream 59706 623115 ~ 624620 (+) True G203296
TU240758 lncRNA downstream 67881 631290 ~ 631582 (+) True G203303
XM_026911441.2 mRNA upstream 5927 543400 ~ 549365 (+) True pax10
XM_034310148.1 mRNA upstream 25668 523113 ~ 529624 (+) True LOC117598976
XM_034309750.1 mRNA upstream 48162 496444 ~ 507130 (+) False nosip
XM_034309751.1 mRNA upstream 48162 496812 ~ 507130 (+) True nosip
XM_026911422.2 mRNA upstream 59723 486254 ~ 495569 (+) True LOC113525007
XM_034309743.1 mRNA downstream 9985 573394 ~ 586456 (+) True bcl2l12
XM_034309742.1 mRNA downstream 9985 573394 ~ 586456 (+) False bcl2l12
XM_026911431.2 mRNA downstream 9986 573395 ~ 586456 (+) False bcl2l12
XM_034309741.1 mRNA downstream 16453 579862 ~ 586456 (+) False bcl2l12
XM_034310150.1 mRNA downstream 86035 649444 ~ 652250 (+) True unc119.2
TU240520 other upstream 27672 524812 ~ 527620 (+) False LOC117598976
TU240433 other upstream 214016 199260 ~ 341276 (+) True G203077
TU240434 other upstream 285472 267579 ~ 269820 (+) False prl
TU240437 other upstream 352487 201950 ~ 202805 (+) True G203081
TU240365 other upstream 392156 156620 ~ 163136 (+) True G203047
TU240776 other downstream 108815 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 144365 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 163398 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 189866 753275 ~ 758058 (+) False fus
TU240783 other downstream 483396 1046805 ~ 1051139 (+) False armc5

Expression Profile