RNA id: XM_026911435.2


Basic Information

Item Value
RNA id XM_026911435.2
length 4761
RNA type mRNA
GC content 0.55
exon number 15
gene id srrm2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 653037 ~ 666347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATGACGTCCTCCGTGACGACACGTTTCGTTCTTTAGCCAACGTTACGCACCtcaatttttagtttttttttttttggcaaaattgTTGGCTTTGTTTGTCTTTGgtgggtttttttatttcttcagctCAGATTGTTTAGAAGTCGCTTTTTGTCAGGAGCGTGTTTTTGTTCTTTCCCTTCGCGGGGGAACAAAGAGAGCGGAGATGTATAACGGGATCGGATTGACGACGCCGCGCGGCAGCGGCACCAACGGCTACGTGCAGAGGAACCTGTCGTGCGTTCGGGCCAAGCGCAGCCGAGACGATCACGGAGGACCGAAGGacgagaaggagagagagagactggagagTCAGCTGAACCGACAACCCAACGCTGATATCCTGGAGCACCAGCGGAAGAGACAGCTGGAGGTCAAATGTGCTGAACTGCAGGACATGATGGAAGAACAAGGGTACTCCGCTGAGGAGATCGAGGAGAAGGTGAGCAGTTTCCGTATGATGCTGCAGGAGAAACAGGATCCTCCTCCACCCGCTGCTGAGAAACCAAACGTGACGGAGACGCACGCTCTCGCCGCCGCTAACCAGCAGAAGAACGACCGGCTCAGGGAGGCGTTCGGCATCGGCTCGGACTACGTGGACGGCTCGTCCTTCCACCCCGAGCGtaaagagcgagagagggagaagagagagcaggagaggctggagagagagaggatgcagCAGCAGAAATATCAAATTATTGAAGATTCTGATGAGTCGGATTCTTCATCTACTCGAAAACAGAGCCgtaagaagaaaaggaagaaagaaaaaagtagagagagctCTGAAAGTCCTTCTCCATCGCCTcgaagagagaagaaaaaaaacaagacgaagaaaaagaaaaaGGAGCGATCAGTGCAGAGTGACCGCGGGAGttCGTCTGAGGACAGGCCGGAtgtaaagaagaataaaaggaAGAGGAGCAGTGAAAACGAGACTCCGCCCCCTACGAAGAGCCGGCGGCGGCGACGCAGCGGATCGTCCAGCTCGGCTCGCAGGTCACCAGTCGCGGTGAAGGAGAAACAGCACAATCCGCCTGTCAGCCGGGCAGACGAGGGGAGGAAGGGCAGGTCTCCTGAGCGCAGGGGTCGCCACAGGGACAGTCCGGAGAAGATGGAGGTTAGAGAGAAGTCCTCGAGACATTCCAGGTCCCCTGAGCGAAACAGGAAGGACCGGGAGagggacagggagagagagagagaaaaggagcgAGTGAAGGAAAAGCCCCAAAGAGGACGCCACGATTCGTCGTCTCCGTCTCGGTCTCCGCCCCTTaaacagcagagagacagacgagCACGCAGTGaggagcgagacagagagaaacctCCTCAACGGAAAAGACACGACTCCTCCTCTCCGTCACAGTCTCCGAAACGCCAGAGAGACAGGAGGCAGAGGAGCGTCGAGAAAGAGCGAGAGGacgagaggaggaagagggacAACAAACCCCAGAAAAGACACGACTCGTCGTCATCGCCGTCGCCTTCACCGCAGAGGGACAGAGCGCGGAGAGGACGCAGCGGCGAGAAGGAGAGAGCGTCTTCTCCCGCACGTCCTTCAGACAGGGACAGAACGAGGGACAGAGACGCCGTCCCGCAGAGTCGGGTCAGAGAGAGCGATaaacggagagagagagcccGCTCCAGCGACTCGCCCGGGTCACCTGCCCGCCGCTCGCCACGCTCCAACGGAAAGCAGAAAGAGGCGGAGCGAGCGAGGGAGAGGGAGCgagaggagcagagagagaaagagcgggAGGAGGCGAGAAGaaaagaacgagagagagatgcagaaaaGGGACGAGAAGAGgcgaagagaaaagagagagagagtgacagggAAAAGGGACGAGAGGAGACGAGGAGAAATGAGCGAGAGAACGACAAAGAAAAGGAACGAGAGGAGACGAGGAGAAACGAGCGAGAGAATGATAGAGAAAAGGGACGAGAGGAGACGAGGAAGAACGAGCGAGAGAGCGATAGAGATAAGGGACGAGAGGAGACGAAGAGAAATGAGCGAGAGAACGACAGAGAAAAGGGAAGAGAGGAGATGAGGAAGAACGAGCGAGGGAACGACAGAGAAAAGGAACGAGAGGAGGCGAAGAGAAGAGAGCGAGAAAAAGACAGGAGACGCTCTGAAGAGAGACCCTCCGGGAAAGACGGGGAGACGGGAGACAGGAAGACGGACCGAGACAAAGCCGAGACGGAGAGACGAGACGAGAAGGTGAGGGAGGACGAGAGGCCGGGGAGAACTCAGGAGAAGAGTCcactggagaaagagagagagaaagcgcaaagcaaggagaaggagaaaaagaaatccAAAGGTTCGAGCAGCAGCagtgacagcagcagcagcagcagtgacagcagcagcagcagcagtgacagCGACTCCGACAGTTCCTCATcgtcatcttcctcctcctcttcctcctcctcttcctcctcttcctcctccgacgatgaaaagaaggagaaaagtaAAGAGGCGCCTCACGCCGTCGTAGCGCAGGCGGCGGCTcggaaagagaaggagaaagagaatggAGGGAGAGACGCAGACAGGTACACGCCCACAGAGAGGGAGAGCTCCGCCCCTGTATCCACACAGGCTCCGCCCACCCGAAAGGACGACAGGGATAGAGGCAGAGACAAGAGATCTCCATCTCCTCAGAAGGAacgacagaaagagagagagcaagggaaAGAGAGGTACACTCCCACCGAGACATCGAGCCCTCCTCCGTCTCCTCCATCACGAAGGAGATACAGTCCGGAGGAGAACGTAAGAACCCACGGCAAAGATCTGGAGAAGTCCAGGGAGCGCGGGAGCGACCGGTACACGCCCATGGACCTCGAGCGCCGAGAGAAGAACAGGACGAGCGAGAGAAAGCGGCCGTCTCCACCCAGAGCTCGGGAGGAGGAGATCCAGAACAAACGGGCTGCATCCCCGTCACGTTCTCCATCACGTTCTCCGTCACGATCTCCTGCACGACAGCGCGCAGATCCTCCACGCTCCCCGAGCCCGAAGCGAGGCGTCAGGAGAGCGACACCGCCCTCGCGCCgagaccgagagagagacagagagagagaccgagacaGAGGGAggccggagagagagagagagcacgccACGAGAAGGAGGACGAGAAGCAGCAGGTCACGAAGCCCACGCAGACGCTCACCTCCGTACAGGTCCCGTCGTTCTCCTTCTCCTGCGTATCGGCGCAGAAGTAGTCGCTCTCTGtccagagaaagggagagagagagggagcgggaaaaagagagggagagagagcgagaaaaagagagagagagggaaaaagagagggagagagagagacatcgtgaacaagagagggagagggagcgggagcaggagagggagagagaacgagaacgtgaaaaagagagagaaaagaaagcaagatCACCTCCTCGTCGCTCTCCATCTTCTTCCTCTACGTCTTCATCCTCCTCGAGTTCGTCCTCTTCGTCCTCGCCCTCTCCTCAGAGGAAACCTGATCCCCAGAAGGACAGAAAGCCCGAGAAGAGGCTCCGTTCTCGTTCCTCCTCACCCCGTCCCGCTCGGGATTCTCCTAAACGCTCCAGACAACCGCCTCCGCGCTCCAGATCTCCTCccgtcagccaatcagataCGAGAAAGACCTCGAGGGGTCGCTCGAGGAGCCAGTCACCTGCTGAGCGACGCACGACTCGGAGCCAGGAGCGGCCAATCAGAGGAGAGAACGCGGTGAACGGGAGAGCAGAGAAGGAAGTCGTGAAGCAACAGAAGAGCGACAGCAGGAGCAGCTCCAGCTCTTCGTCGTCCTCGTCGTCATCGTCGTCTTCATCCTCGTCCTCTGATAGCTCCGACTCTGAGACGGAGAAAGGGCAAGGGAAAGCGGCAGCGAGTAGACGCTCGTCCTCGTCAGAGAGCGAGGaagtgaagaagaaaagTCCTCCACGTCGGCCGAGAGAACCTGCAGACTCGCTCAGAGACTCCAGATCGCTCAGCTACTCTCCTCCTGCACGTCTGCGCCGAGCCGCACGCTCTCCCCCCGCGCGGAGGAGATCGAGGAGCAGGTCGAGCAGCCGGCGGAGAAAATAGTTAATCGCGCTGTACATCACTGAAGCGTTCTTCGTCTAGTTCTTTTCCCTGACCTTTCTATTGTGTctttggagggaaaaaaagaagaagaaaaaaaaagtcccggcagaaaaatatttgtaaattatgATCCACACGGACTGGAGCGAGGAATCATCTCAGATTTTCTGCACTCACGTTCACCCACAGGGatgtttttggtttattttttactttcattgcggtgatgatgatgatgatgatgatgatgatgatgatgaggatgaggaaagagagagagaagtaaaacCATAGACACGTCATGTGTTTCTCCGTGCCAACACAAACCTGAATActcgattataaataaataaataaatacaccggtgtctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgccctgcTGCGTTGTTCTGAATGTAGATAAAAGTCACTATGGTCAGAACCGTCACTGAGTGGACCTTGTCCTGCTTACACgcctttttctttcactttgtgGGAAAAGTCAAGgactaatgaataaataataaatggttgtatctgta

Function

GO: NA

KEGG:

id description
K13172 SRRM2, SRM300; serine/arginine repetitive matrix protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240766 lncRNA upstream 853 650051 ~ 652184 (+) False unc119.2
TU240758 lncRNA upstream 21455 631290 ~ 631582 (+) True G203303
TU240750 lncRNA upstream 28417 623115 ~ 624620 (+) True G203296
TU240732 lncRNA upstream 40482 610704 ~ 612555 (+) True G203278
TU240735 lncRNA upstream 54314 595178 ~ 598723 (+) True G203281
TU240767 lncRNA downstream 477 666824 ~ 669749 (+) False thoc6
TU240788 lncRNA downstream 13431 679778 ~ 686630 (+) True G203328
TU240779 lncRNA downstream 14554 680901 ~ 689650 (+) False thoc6
TU240757 lncRNA downstream 18276 684623 ~ 723692 (+) False thoc6
TU240781 lncRNA downstream 71992 738339 ~ 738727 (+) True G203321
XM_034310150.1 mRNA upstream 787 649444 ~ 652250 (+) True unc119.2
XM_034309743.1 mRNA upstream 66581 573394 ~ 586456 (+) True bcl2l12
XM_034309742.1 mRNA upstream 66581 573394 ~ 586456 (+) False bcl2l12
XM_026911431.2 mRNA upstream 66581 573395 ~ 586456 (+) False bcl2l12
XM_034309741.1 mRNA upstream 66581 579862 ~ 586456 (+) False bcl2l12
XM_034310155.1 mRNA downstream 461 666808 ~ 689417 (+) True thoc6
XM_034309755.1 mRNA downstream 23842 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034310156.1 mRNA downstream 41391 707738 ~ 717019 (+) True rnf25
XM_034309733.1 mRNA downstream 51270 717617 ~ 726285 (+) True kat8
XM_034309754.1 mRNA downstream 60382 726729 ~ 732890 (+) True si:dkey-16l2.17
TU240520 other upstream 125417 524812 ~ 527620 (+) False LOC117598976
TU240433 other upstream 311761 199260 ~ 341276 (+) True G203077
TU240434 other upstream 383217 267579 ~ 269820 (+) False prl
TU240437 other upstream 450232 201950 ~ 202805 (+) True G203081
TU240365 other upstream 489901 156620 ~ 163136 (+) True G203047
TU240776 other downstream 5877 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 41427 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 60460 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 86928 753275 ~ 758058 (+) False fus
TU240783 other downstream 380458 1046805 ~ 1051139 (+) False armc5

Expression Profile