RNA id: XM_034309731.1


Basic Information

Item Value
RNA id XM_034309731.1
length 1733
RNA type mRNA
GC content 0.49
exon number 2
gene id si:ch73-248e21.5
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 642509 ~ 644586 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAACAGTCATTTCCGCCTAGAGTCCGCCTGGTGGTGTGAAGTATCCCAGAAAGCATCTGTGGCAAGAGTTGCATGCGCAAAAGAGGAAACCATGGAGAAAGGGgaagagatgagatgatgagacgCACAGAAAAAAAGCTTCTCTAGAACACATCATGAGGAAGACGAGCGCCGTGTCTCTAACCGTCTGGTTTGCTCAGGTTCTAACGCTCTGTGCTCTTCATGAAAACCTCCTGACCACACAGGAGCTGGACGTCTCCATAACAACCTCAGAAAAACTCACAACAAACCAAGATGTCAGGACGAAAACAGAAACGATGGCAGTGATGACCACAACAATGTCAGCAGAGGAGTTGTTGTCAGATTGGACGCCACATCTGACACCCACACTGGAGACGAACGGCTTTACGAGCTCGGTGGAGGACAAAAGGAGAAATAACACGATCAGCACCTCTCACCACAACATCATGAGTCCCACCGAGATGACTGTCTCTACAAACACCACAAGTGTCGTGACGGAATACCAAGAAACAAGAACTGGCACTGAAAGTACAAGTCTAAACATTCAGGAGATGACTGAGATTTCAACATCTGGAACATCCATCCAACTGGACCAGGATGTCCAAACAACAACATCTACGAGTTGGACAGAAGATAGAACGAGTGATACTGATGAAGACAACGCCACCACTCTGATTCACTCAACATACAAGACTGATGTAACACTAACTAGCGGAAGTTATGACACAACAGACCACCAAAGTCCAGCTCCAACTACAGCAGGAACCTCTCTGGAGATATTTTCTACGAACCAAACACATCCAGATGACACCATGAACACTGTCACACCTACAGGAACATCAGGACGTATCAATATAACAGCAACGTCAGTCCGTTCTACACAAGTTACAAGCGGCtccacagagaacacagaggaacCCCTGGTGTCTAGTACGAAGATGATGGACTGGGAAACGGAGGAGAACACCGAAGTTCTCGCAACAACTCGAGGAAATGTGTATGAAAACACGTCAAACACAACTTGGAGAGACGGAACATGGTCTACGAACCCTCAAGACACCTGGagcaccagcaccaccaccacgTCCAAGAACACCTCCACATCAGCGACACCACACTGGACGAACTGCTTCGATGAGGATTCATCACCTCAGCCTCGCCGTTTCTCAAAGCTGGTCTGTTTCATCACACTGTGGACTCTCACTATGATTGCATCCATCTTCCTGGGTCTCACTGTGTTCCTGTGGGTGAGTCTGTCCGTCAGAAAAAAGAGGGCAAGACGCACGGGACGAGGATGGAGGGACAGAAAAGGACAAGGTCCAGGAGCGAAAGACAGCCTGTGGGCGGAGCTGGGCTCGTCCGCAGAGGAGAGAGTGGAGTTCTGGTACACTGATGGGGCCACGGTGGAGGAGGACAAGAGAAAACACAGAGCGAGACAAGCGAGGACGAGGAAGAACGGAGAGAAACAGGTGGAGACAGAGGAGGAAATGTGGATCCAGCCGAAGGTGACTCTAAAGGACATCACAGAGTTCTGGTACGCAAACGGGAGAGTGAGACACGAAGAGGAGACACAATGCGAACTCAAcgaagaatgagagagacagagagaaagaaacagagtgaaggagagagacacacagagtgacagaaagatggagaaaaagagagagaaacatttagagtgaaagacagagagatagacagagacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579336.1 lncRNA downstream 75711 551404 ~ 566798 (-) True LOC117598763
TU240717 lncRNA downstream 92798 549463 ~ 549711 (-) True G203271
TU240714 lncRNA downstream 108926 533292 ~ 533583 (-) True G203268
TU240706 lncRNA downstream 136597 505316 ~ 505912 (-) True G203261
TU240677 lncRNA downstream 152778 486309 ~ 489731 (-) True G203254
TU240908 lncRNA upstream 20952 665538 ~ 669489 (-) True G203425
TU240973 lncRNA upstream 48913 693499 ~ 693886 (-) True G203471
TU240956 lncRNA upstream 75503 720089 ~ 763924 (-) True G203458
TU240954 lncRNA upstream 84225 728811 ~ 738745 (-) True G203456
TU240988 lncRNA upstream 93283 737869 ~ 745841 (-) True G203486
XM_034309740.1 mRNA downstream 3302 635684 ~ 639207 (-) True si:ch73-248e21.7
XM_026911406.2 mRNA downstream 11798 622345 ~ 630711 (-) True tspan4b
XM_034310149.1 mRNA downstream 28323 611190 ~ 614186 (-) True LOC113525013
XM_026911421.2 mRNA downstream 125559 512361 ~ 516950 (-) True rcn3
XM_034310157.1 mRNA upstream 95082 739668 ~ 750458 (-) True LOC117598978
XM_034310158.1 mRNA upstream 105477 750063 ~ 752243 (-) True LOC117598979
XM_034309761.1 mRNA upstream 275421 920007 ~ 931906 (-) True clec19a
XM_034309753.1 mRNA upstream 399683 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 411784 1056370 ~ 1061679 (-) False LOC113528078
TU240668 other downstream 152778 486222 ~ 489731 (-) False G203254
TU240540 other downstream 308865 331541 ~ 333644 (-) True G203154
TU240560 other downstream 479925 162126 ~ 162584 (-) True G203170
TU240322 other downstream 588234 37599 ~ 54275 (-) False aldh16a1
TU240992 other upstream 96658 741244 ~ 750799 (-) True G203488
TU240994 other upstream 96811 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 98107 742693 ~ 749361 (-) False G203488
TU241063 other upstream 265531 910117 ~ 911228 (-) True G203544
TU241084 other upstream 400151 1044737 ~ 1046555 (-) False si:dkey-66i24.7

Expression Profile