RNA id: XM_026911774.2


Basic Information

Item Value
RNA id XM_026911774.2
length 2689
RNA type mRNA
GC content 0.38
exon number 13
gene id LOC113525295
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 116874 ~ 139838 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGGAGACTAAACCCTGAACGCATCTGGCAACCCATGTGAGAGCTggaagaaaaagacaaatacTCGCCCATCACACGTAGGATTAAcacgtgggtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagttattaAGCCGACTCACTCACGTTCAATAGTGAAAGTAAATTGCACCACGGGCGCGAGACACGCAGAACAGAGAACTTGCAGCAGagggacacagacagagaagtctcacacacaccggGGATCATCACGGAGCTGCGCAAACACTGTGTTTCCCACTGGAGACACACAGGACCATGAGGAAATGAACTCTGATGGTCAGTACATCAGCGTAATGAAGGGAAAAAGTCAGGCCTTTTGGATTGTTCTGGCTGGAGTTTTCCTTGCTGCGAGGGTGTGTGATGCTGAATGTATTAAGCTCAACTTTAAAGCTCACATCacGGATCATTTATTAATTGACCACTGGTTTCAGATGAAGAATTTCACCCCCACTGGTGAGGAGGTTAAGgaGCAGCATGAACTCCTGTCTGTCATTAACACCATCTGTTCAAGTTTCCTagcaaatgaaatgttttaccACCCAAATCCTATTAATAAGACCATACAGACAAAAGTGGTGTGGACATATTTACAAATGGTGAAAGCTCTGgtaaATGCTTCGAGTTGGAATGACACTGTACAGTTTTGTCAAAAACATTCCTGCTTTGAATCTTTTGGCACGAGTTTCATCAACACAACGCAGTTTGAGAACATGTATAAAAAAGTCTGTAAATGGAAGATATCGATCCCAGAGTGCCCGTTTCCTCAGAGCACAACAACAGCAACGAGTCATACATCGACTCCTACTGCACCTGAGCCACGAGAGCAGACATCCTCTGAGTCACCTAACGaaaatatttcaaaacagcCCATAAAATCTGATGTCCAGAATCCAGAGTCTCAGTGTGTCTCGTCAGGCCTGGTGGTGTCAGTGGTGGTGAACATCATCCTCATGATCCTTGTCAGCGTTGGACTTTATCATCAAGGACGCAGATATCTGAGACCTGTTCAGGATCAGAATAATAGAGAAAGTCATACAGAGAATGTGGATTTAGTTTCATTGAATTCATCAACATAAATACACCTGCAGTGTGCTGAGCTTTGGACATAACCACGATGCTCAGTGAAGTGGAGGCTGGATTTTGGACTGAAGCTGATGCTGATTATAAACTGGAACGTTCATCATCTGGTGGAACTCCATATTAAAGTCTGCTGTAATAAAAGCACAAAGGCAAAGTGAGTGCTTGATACACTGGCGCTGTGATCCTGTGAGTTCctcatgtgtgtatataaaactgAACAAACTGACAGCTAAAATCTGATGGTGGGATTTAGcagtaaattaaatatgaatgaaaaaaatgagtgaATCTACCTGAGGGAGGACGATTCACACATTTTAGTAAGAGAAAGATACTTGTGTGGAATAATGAACACAAaactaaaagaaataatatagcACAAACAGCGACTGGGCCCAAGCACCCTCTAGAAGCAGTATGACAAAGCGTGGTACATTAGGCAGTTGGTGGAGCTGTGAGTCTCTGACAGAGAGACACGTAAACTTTGAACCACATTGAATAATGTATTGAATTGAATGGCATGACTTGTTCGTTGATCGCATCACCATGTCAACACCATTTAAGATATTGAAAACCTACACACACTTGCTGTTTGTGTAATAAgctaatatataacatatatagctaatatctctccctctctctctccatatatatatatatatataaagtattatatatttatatgtttgtgtgtgtgagataaataATGAAGCTATTATTGTAAATTCACTTAAAAAGCAGGCAAAGAAACGTGGACGCTTTTCACCTTTTCAACAAGTCCCAAGCCCTGAAcatgccccgccccctttcctcATTAAACACATGTTAAATGGCTCTAAGTTTGCATACTTGAATCGGAttggcttttatattttatgaagcAAGAATAGTTTGTTGTCATGTGGTTCTTTACACTTTGACTGTCACTGTTTGTGAACTTCGCTGAAAGAATTTAATcatgaaaaaatatacatttcataaagttttctgtgtttaaaagGTCAAACTGTGTTGTAAAACACATTGTTCATTGCCCAGTGATAGAGAACATTATATaactgttatatttattatattatattatattatattatattatattatattatattatattatattatattatattatagtaatgttttatatttgagAGCAgtattttatcatttgttaGATTTGTTCAGGACGTAGTCAGATTCTTATTTTCATGTCTCGGTTGATTTCAGTGTCCACATTTACTGAGACTTTTACTCCCATTTCAATAAAAAGCACTGGGGACACGGTATTTTTACAACAATCTAACGGGTGTAATTActgaaaatctttatttaacacTGTTCCATTGTGTTATTGTGGTGTTATTTGTGATTTACACGTCAGTCATTAACgctttatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacattcagtctgttgtatactgtagtgtgtttctgctgttgtgtaAAAggttatttatatacagtttattgTTAATGATGTGCTCATGAACCGCATGAATAATAAAA

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240341 lncRNA downstream 23738 91254 ~ 93136 (-) True G203027
TU240336 lncRNA downstream 35717 80630 ~ 81157 (-) False pih1d1
TU240337 lncRNA downstream 35717 80630 ~ 81157 (-) False pih1d1
TU240326 lncRNA downstream 64236 50132 ~ 52638 (-) True G203016
TU240318 lncRNA downstream 67019 49119 ~ 49855 (-) False aldh16a1
TU240556 lncRNA upstream 18041 157878 ~ 160160 (-) True G203169
TU240566 lncRNA upstream 35681 175518 ~ 175992 (-) False G203173
TU240563 lncRNA upstream 35789 175626 ~ 175992 (-) True G203173
TU240564 lncRNA upstream 35789 175626 ~ 175992 (-) False G203173
TU240565 lncRNA upstream 35789 175626 ~ 175992 (-) False G203173
XM_034310143.1 mRNA downstream 13761 80628 ~ 103113 (-) True pih1d1
XM_026911781.2 mRNA downstream 37910 65197 ~ 78964 (-) False tnnt1
XM_026911780.2 mRNA downstream 37912 65197 ~ 78962 (-) True tnnt1
XM_034310218.1 mRNA downstream 62599 26642 ~ 54275 (-) True aldh16a1
XM_026911769.1 mRNA downstream 97038 18347 ~ 19836 (-) True LOC113525292
XM_034310144.1 mRNA upstream 4331 144168 ~ 200392 (-) True cpt1cb
XM_034310104.1 mRNA upstream 64034 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034310105.1 mRNA upstream 64034 203871 ~ 250569 (-) False si:dkey-16p21.7
XM_034309957.1 mRNA upstream 146204 286041 ~ 292611 (-) True prmt1
XM_034309956.1 mRNA upstream 148369 288206 ~ 292612 (-) False prmt1
TU240319 other downstream 62599 37599 ~ 54275 (-) False aldh16a1
TU240560 other upstream 22289 162126 ~ 162584 (-) True G203170
TU240540 other upstream 191704 331541 ~ 333644 (-) True G203154
TU240668 other upstream 346385 486222 ~ 489731 (-) False G203254
TU240992 other upstream 601407 741244 ~ 750799 (-) True G203488
TU240994 other upstream 601560 741397 ~ 743393 (-) False LOC117598978

Expression Profile