RNA id: XM_026911780.2


Basic Information

Item Value
RNA id XM_026911780.2
length 1074
RNA type mRNA
GC content 0.48
exon number 15
gene id tnnt1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 65197 ~ 78964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTACCCTGCGTGTATAAAAAGAGCCTCACTGTTCCCCACTACAATCACTGCACCtccacagagtgtgtgtgtctcatccTCAGCAACATCCTCCACAGCTCACTAAGAGTCTGAATCATGTCTGATGTAGAAGAAGAATACGAAGAGCAGGCGGAGGAGGCAGAAGAGGaacaagaggaagaagaagccATCAGACAGGAGGATGAAGAGCAGCAGGAATACACGGATTATCAAGAAGAAAACCAGGAAGAAGAGGAGGAACGGCCACGCCCCAAGCCGATGGCTCCTCAACTCGCTCCTCCGAAGATCCCTGAAGGAGAGAGAGTCGACTTCGATgACATTCACAGGAAGAGGATGGAGAAAGACCTGTTGGAGTTGCAGACTCTGATTGAGGCTCACTTTGAGCagaggaagaaggaggaggaggagctgatTGGACTGAAGGAGCGAATTGAGAGACGGCGCTCGGAGAGAGCCGAGCAGCAGCGTGTCCGAGCTGAGAAAGAGCGAGACCGACAAACACGCATTGCTGAAGAACGTCAGAggaaggaggatgaggaggcaAAGAAGAGAGCAGATGATGAAGCTAAGAAGAAGAAAGTTTTGTCCAACATGGGAGCAAATTTTGGTGGCTTCCTCGCTaaggcAGAGCAGAGACGAGGGAAGCGTTTGACTGGGAGGGAAATAAAGCGGAAAACTTTATCAGAAAGACGAGCAGCTCTCGGCATTGAAAATTTGAGAGAGGACGGACTGAGGCAGCGAGCTCAGGAGATGTGGGAGTGGATTTATCAGCTGGAGTCGGAGAAGTTTGACTTCATGGATCAGATGAAGAGGCAGAAATATGAGATTGTGGTTCTGCTAAACAGGATTTCACACGCCCAAAAGTTcaAAAAGGTCCATGGAAAGGGAAAAGTCGGAGGTCGCTGGAAATAAACTGTTTTGTTCTTACAAAGCAGAAGTTAGAAAACGGAtgcagagaaaacagaaatgaaattagacaagaaatggaataaaaaaaacctcttcctcttcactcattcacagaATCTGCACACTCGTctttagaataaaaa

Function

GO: NA

KEGG:

id description
K10372 TNNT1; troponin T, slow skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240326 lncRNA downstream 12559 50132 ~ 52638 (-) True G203016
TU240320 lncRNA downstream 15342 48980 ~ 49855 (-) False aldh16a1
TU240336 lncRNA upstream 1668 80630 ~ 81157 (-) False pih1d1
TU240337 lncRNA upstream 1668 80630 ~ 81157 (-) False pih1d1
TU240341 lncRNA upstream 12292 91254 ~ 93136 (-) True G203027
TU240556 lncRNA upstream 78916 157878 ~ 160160 (-) True G203169
TU240566 lncRNA upstream 96556 175518 ~ 175992 (-) False G203173
XM_034310218.1 mRNA downstream 10922 26642 ~ 54275 (-) True aldh16a1
XM_026911769.1 mRNA downstream 45361 18347 ~ 19836 (-) True LOC113525292
XM_026911772.2 mRNA downstream 45412 11118 ~ 19785 (-) False LOC113525293
XM_034310143.1 mRNA upstream 1666 80628 ~ 103113 (-) True pih1d1
XM_034310095.1 mRNA upstream 37912 116874 ~ 139838 (-) False LOC113525295
XM_026911774.2 mRNA upstream 37912 116874 ~ 139837 (-) True LOC113525295
XM_034310144.1 mRNA upstream 65206 144168 ~ 200392 (-) True cpt1cb
XM_034310104.1 mRNA upstream 124909 203871 ~ 250572 (-) True si:dkey-16p21.7
TU240319 other downstream 10922 37599 ~ 54275 (-) False aldh16a1
TU240560 other upstream 83164 162126 ~ 162584 (-) True G203170
TU240540 other upstream 252579 331541 ~ 333644 (-) True G203154
TU240668 other upstream 407260 486222 ~ 489731 (-) False G203254
TU240992 other upstream 662282 741244 ~ 750799 (-) True G203488
TU240994 other upstream 662435 741397 ~ 743393 (-) False LOC117598978

Expression Profile