RNA id: XM_026915985.2


Basic Information

Item Value
RNA id XM_026915985.2
length 3964
RNA type mRNA
GC content 0.48
exon number 32
gene id LOC113527852
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19860406 ~ 19885555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caatcagaacgcGCCATTTCTGAGGGGGACTTTTTCGCGCGTGCAGTAAAGTTGCTGAACGCTGACAGACTGTTAGCTTTATATGAAAGAGTAGTAGTGTACAGCCAGGAACGTCTCAAAAATTAAAGTTCCGAGAAGGTGGTGCAAGCTATCTTTATTTGGATAAAGCGCCGCCATCGTCTCCTCAGCGGGACATGAAAAAACCGAACAACATGGTGCTGGCAGAATCTGACCTGGACAGtTTGAGTCCTGAGGAGCCAGATGATGTTTCAGGATCTGATGAAAATTTTGAACCTGTCatgaaaaatacaaagagaaaacaGGGACCGGCTCTGGAAGCAACACCTTCTAAACGGAGTAGACGGAGAGCAGACAGCAGCACCtccagttccccactcacacacacacctggagcttctcgcacaccaaaacacacactcgccccACAGCCTGAGACGGATGGaacagaaaggagaaagaggGGGAGCATGTTTGAGGCTGTGAGATCAGGACGCTCTGCACTGGTGACGGTGGTTGATGATTGGCTGGATGACTATAAACAGAATCGAGAGGAGGGTTTTCTAGAGCTCATTAATTTTGTTGTTGAGTGCTGCGGCTGTAAAGGAATCGTAACAAGGGAGATGTTTGACGTCATGCAGAATGCTGATATCATCAGTCACCTGACCAAAGAGTTTAATGAGGACTCAGTAAGTTACCCCCTGGCAGCAGGGGGGTCTCAGGGCCGACGTTTTCGCGATGGactgtgtgagtttgtgtatcAGCTGGTGCAGCGCTGCAGAAACAGTCTGCTCTATGATGAGTTTGTGTTCTCAGCACTGATTGCCTTCCTCACGGGGCTCGCTGATTCGCAGGTCCGAGCCTTCAGACACACCAGCACGCTCACTGccatgCGTCTGATGTCTGCTATAGTGGCAGTGTCTGCTGTGGTGTCTGCTCAGGCTGACACAACACAAAGACGCTATCAGCTGGAGAAAAACAAGAGTGCTGCACACAGAGCAACTGAGAGACTGGAAGAGCTCCAGAACTCCTACAAtgagctgttgGAGCAGCAGGAGGAGTTGCGCTCTCTGATGAACGGGATCTTTAAAGGAGTGTTTGTTCATCGGTATAGGGACAAAGTTTCGGAGATCCGTGCTGTGTGTATGGAGGAGTTGGGGGTGTGGCTTAGAGAAAACCCTGCCTCCTTCCTTAATGATGGACACCTCAAATACCTGGGCTGGATGCTGCATGACAAGCAAGCTAGTGTTCGCTTGCGGTGTGTGTTGTCCCTTCAGAAACTGTATGAGGAGAAAAGTTTCATCGGCCGCCTGGAACTCTTTACCAGCCgctttaaggagagGTTGTTGAACATGGTGCTGGACAAAGACCCTGATGTTGCTGTGGAGGCGGTCAGACTGCTGCTGATCATTaagcaGAAGACGGAGGATGGTCTGTCTGAGGAGgagtgtatgcgtgtgtatccACTAGTGTTTGCTGCACATAGAGGACTCGCTTCTGCAGCTGGAGAGTTTTTGTACTATGTgctgtGTACTGAGGTGGATCGTCTACTAGAAGAAGGGGAGATAGAGAGGCGCAATGTCACGTTCCTCAACCTGCTCACATGCTTCTTTATTCAGAGCAAGtatcaTGAACATGCTTCGTACCTGGTGGACAGCCTCTGGGGTGTGGCGGTGTCGGAACTTAGAGATTGGGAGACAATGACATCACTGCTGCTTCAGGAGAATGGGGAGGAGAAAGggctgaatgatgatgaagaggcCGCTCTGATTGAGCTGATGATGTGTGCAGTCAGACAGGCAACAGAGGGAACTCCACCTACAGCTCGGCTCCTCGGGAAGAAGaattTGAAAAGCAGAAAGCAACAAACTCTGGAGAGGAAACGCATCACCAATCACTTCATACCACTGCTGCCTCAGTTACTCACTAAGTTTTCTGCAGATGTGGATAAAGTGGTGTGTTTGCTCAAAGCTCCTCTGCATTTTGATCTTGAGGCTTATGGCAGCACAGGCCGTCTGGAGAAGTATTTGGAGCTGTTGTTATCTCAGGTGTGTGAGATTGTGGAGAAGCATCATGAAGAGTGTGTGCTGGaggcgtgtgtgcgtgtgttgtgtgtgttgtgctgtgatCAATACACGTTCTCTGTGCGTGCTGAAAGAGTTGTCAGTCAGCTACTTGACTCAATGCTGGAGAGATTTAACACACACCTCGCCGATGTACTGCAGggCACAGCTGATGAGGACGATGTGTACAGTGCTGTGACTTCCCTGAAGAGATTGGCCGTTTTCAGCAGtgcaaGAGATCTGACTGTGCTGAAGCTATTTGAGCCATGCTTCCTTCTGTTGAAGACTGGAGTGGAGTCCAGAGAGGTGGACAAGGAGTTGATGTTGTGTGCAATGAAGTGCGCTGCTTTCCACTTGCTGTGGGCGAGAGTGAAGATCTCACAGACACCTCAACCTGAGAAGgcagaGGTGAAAAATTTGTTGAAGCAGGTTCGTTCGTTTTGTGTGGTGTGCCAGAGCTGTCTTTCTATGAGCAACAGTCTTATCAGGAACCAGgcctttgaatgtgtgtgtgatgtgttggtGGTGTTAGGACAGGGCAAAAGCAGAAATGCTGATGCTCAGAGTGTGTGCGTTTCTCCTGATGACACACTCAGGGCTGAGATGGCCTCGTTCCTAATTGATTACGTATTCTCTGACGCTGAGGATGAGGACACAGGTgtggatgaggaagaggagctgAAAATCATTGCTCTCCAGCGCAGAAGGAATCAGCTGGCAGGTTACTGCAAACTTATCATTTATGGAGTGTTGGAGCTCAGAGCAGCAGCTGATGTCTTCAAACACTAcagcaagttctacAGAGATTTTGGTGATATAATTAAGGAGACTCTGAGTAAGTCTAAGATTATGAGCCCAGTGGAGAGTGCAAGGACAATCTGCCTCAGCCTGCAGCAGctgtattCTTCATTAGGTGATGAGGCTCATGATGAAGAGATGAGGGACATCAGAGATGTGGCTAAGAAACTGGCTATGAGCTTTGGCATTAATCTACAGCACATCCGCAAACCACTCATCGCCCTACACCAggatggTATCCGGTTTGCGCTGAGAGAAGATGATGAAAGTGATCATCCCAATCTAAGCTTTCTGGAGATCCTCAGTGAATTCAGCCACAAACTCATTAAGCAGGACAGGACACAGCTATTGGATTATCTGcacagtgtgagtgagagtgcgAGTGTGAGTGTAAACACTGCGTGTGTGAGCATGTATGAGCGCTCACTGCGTTCTGGATCCAGAGAGACTCCTGCTGTctctcccccacacacaccagccaaGAGACGCAGAACCACTGAGaggtCAGTCAGTAGCGGTTTGGACACTCCTGCTCTCACCTCCACGGTTATACAGAGCCGAGTTGCGCACGCACATCAACAACCTCGATCACCATCAACAGAATTCAGCTCAGATCAGCCATCAGAGGATGACTTTGTAGAGGGgagtatACAGAGGAAGCTGATGCCTAGCAGGAGGGAGCAGGAGAGTTCTGAACACAGTGATGTACAATCTCAGCTCCATATGCTCTCTCTGATTGAGGAGGATtttgaggaggaggaggaaccTGACATAGAGGACTATGATGAAGACTCAGACGGGGTTGGTGCTGTATCTCTGCCATCAACACGCCACTCCACCAGTTTCCTAGAAGACCTGTTTGAGTgagaaatgcacacacacactgcttaacTTTGTGACCACAGGTGTTTGTTGATGTTAATTCTGTTTGAGTGTTAATGTTTATGAAAGTTGTTCAAAGCAGATATGTACAGATGTACAAGTTTATTCATTGTACACTATAATAACTGTATGGTCATTTGGTTAATAAATTGCATTACAACTAAAATAAAGACTGAAAAATAAAGTCTAATCAGTGGCACAGA

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579341.1 lncRNA upstream 67747 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 144847 19698004 ~ 19715559 (+) True G213864
TU253224 lncRNA upstream 153556 19664704 ~ 19706850 (+) True G213834
TU253176 lncRNA upstream 229095 19630891 ~ 19631311 (+) True G213792
TU253054 lncRNA upstream 389050 19469862 ~ 19471356 (+) True G213678
TU253387 lncRNA downstream 26584 19912139 ~ 19912375 (+) True G213984
TU253415 lncRNA downstream 82453 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 186140 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 255860 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 255860 20141415 ~ 20152693 (+) False G214098
XM_026917158.2 mRNA upstream 17724 19826650 ~ 19842682 (+) True LOC113528548
XM_034309786.1 mRNA upstream 17724 19826650 ~ 19842682 (+) False LOC113528548
XM_026916943.2 mRNA upstream 49515 19808963 ~ 19810891 (+) True msx1a
XM_026917162.2 mRNA upstream 91532 19743995 ~ 19768874 (+) True nsfa
XM_034309661.1 mRNA upstream 438013 19378853 ~ 19422393 (+) True LOC113528521
XM_026916954.2 mRNA downstream 2760 19888315 ~ 19900984 (+) True mcm7
XM_026917018.2 mRNA downstream 22612 19908167 ~ 19910875 (+) True LOC113528458
XM_026916788.2 mRNA downstream 48269 19933824 ~ 19949014 (+) True LOC113528304
XM_034310034.1 mRNA downstream 78165 19963720 ~ 19996933 (+) False zbtb49
XM_034310033.1 mRNA downstream 98068 19983623 ~ 19996933 (+) True zbtb49
XR_004579333.1 other upstream 547188 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 715166 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 940534 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 940534 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 1518469 18184019 ~ 18341937 (+) True LOC113528485
TU253379 other downstream 20647 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 48269 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 92759 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 136954 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1454861 21340416 ~ 21349086 (+) True hopx

Expression Profile