RNA id: XM_026915990.2


Basic Information

Item Value
RNA id XM_026915990.2
length 2338
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113527856
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21390903 ~ 21402724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GcctgctatgtgtgtgtgtggtctgagtGTAAAGATCTCCAGCTGGTTTAAAGCTTCAGAGAGAACTGCACTGTGTTCATTTCCCTTCAGTTGGTTTGTGGGCTTCTGGATGTTCTTGCGTCTCTTCTCTGGACTTACTGAGAAAAAATGCAGGACATCTTAGGGATCCTGCTGATGTTCGCAGGAGCTGCCTCGGGTTTGCTGGTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGAAAACGACTGCACCTGCAAATAACCATGGAGGATAGGTTTGAGCTAAAGATCATAGACAAGACATCTACCTCTcgtttaattataaattatagaaAAACCCAAAGTAACCCACCAAACCCAAATCCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAGCGACGCTGGAACATACACTTTAAGCACGTTTGATGCAAAGGGGAATTCTAAAGGCGATTATACTCTCCAGCTAAACATTGAAGCTCAGGTGTCCTCAGTGAAATTGTCGTACAGCTGCTTGTTCCCTGAAGTCAGGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGTTTCAACTGGACTCCTGAATCAGCCATTCGGTTGGAGAACGAGAACAGCACTCTTGTACTGGAAAAAACACATATTGCCAGTGTCATCTGTCGTGTCGAAAATCACATCAGCAATGACAGCGGTACCATTACACTCGAACAATGTTCTGATTTCACTCTGATTATCCTGAGCTTGGTTTGTGTGCTTCTTATTATACTATCTGTCTTAGCATTCTACATATACAAGAAGAGACAAGGCCTAAGGAACAAAGAAGCCCCTTCTCAGGATGGCACGGAGCTTGTGTATGCGCAGGTCACCCATTTACCCAAGAACAAGACAGAGACAAAACCCAGGATATCCCGAGCTCAGAACAAGGACGTGGAGATCGCCGCAGGGGTCGCTAGTCCCAGCAAGACgaatcagaagaagaaagaggacgAGGTGCAGTATGGCGAGCTGGTGTTTAACGCTCCTGCCCCAAAAAAGAGTGAGATGCCCAAAGGTcaagatgagtgtgtgtactcacagGTCCAGCATGGTCAGTGAGGGACACAATCTCAGCCTGTCTCAGCATGCATCAttaatacagtttatttttatgtatttatttttttgtatccaTTGCTTTGTCGCAAGATCATTCTGGTAGAGGAAGTAGCAGTTGGTGACATTCCACCCATACACACTCATCTCTTACCcaaaagaaaacttcactgaCAGTGAAACTATTTCAATAGCTGATTATGCAATTATGGAATCTTTTCAGGCTGCACAGTAGTACAGTGGTTAGTGTTGCTGTCTTAAGCTCATATACTGTTGgatactgtttgtgtggagttttgcatgttctccctccatccatgtgggtttcctccaggttttcaGGTTTCCTCcgacctcccaaaaacatgccagtaggtagactggctatgctaatttacccctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgcaagCGCGCACTGCAGTGGGCTCgaatagactccagatccacctcaACCTTGACCACCATAGAGTGGTTACTCTAGAggaatgcattatttttttttctatttaaatgtaatgctTCAGTTGCCATTTTAATTCCATTCTACTAGAATGAAATAACTAAGTTTTGTTTGCCATGAAACTGTGTATAGTACTGAGTTCagagttagttagttagttagttagttagttagcttagttattttaatgaaaaagtattAACCTTCACATTCATCGTTGATTCTGCTGtcacaacactgcaaaaaaaaattataacaaatcTTTAATGTTTAGAAGTAAGTGCTTAAAATAAGCATAtttgaaatgagtaaatatgtTTAGAATTGCAATTGCAATTGCCAgttgtgttgttttcttttcctacCTGTGAACACGTGTGCCATCAAGATGATCCTTAATCGTAAGTAAGGCTTTTGAGccttttttctttatcatttgTATTGTTAAAACTgatgaagagaaaataaataggAAGTTTCTTTTTGCACTCTTAAGTGTTGAACTTGAGACACAGCTGTGACTTCCTGGGCATCTCACACACTGCTCTTTGTGTGGCTCCATTTCAAAACcaacatttctgcttttctgtttaaaaagtgctgtacataaGAAGTGTCAATTATTTTATGAGGTTGTTTTctaccatttaaaaaatgttccgTGGgtcaaataaatgaacaaaatgtc

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254313 lncRNA upstream 22675 21368024 ~ 21368228 (+) True G214798
XR_004579331.1 lncRNA upstream 31844 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 31844 21356850 ~ 21359059 (+) False LOC117598756
TU254255 lncRNA upstream 146118 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 204600 21185266 ~ 21186303 (+) True G214731
TU254315 lncRNA downstream 3649 21406373 ~ 21464629 (+) True G214800
XR_004579359.1 lncRNA downstream 11738 21414462 ~ 21416513 (+) True LOC117598826
TU254318 lncRNA downstream 24250 21426974 ~ 21448404 (+) True G214802
TU254320 lncRNA downstream 45269 21447993 ~ 21466726 (+) True G214804
TU254324 lncRNA downstream 71909 21474633 ~ 21474963 (+) True G214807
XM_034309848.1 mRNA upstream 3816 21381780 ~ 21387087 (+) True LOC113527892
XM_034309849.1 mRNA upstream 3816 21381780 ~ 21387087 (+) False LOC113527892
XM_034309781.1 mRNA upstream 41986 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA upstream 41986 21341297 ~ 21348917 (+) False hopx
XM_026916510.2 mRNA upstream 62149 21301643 ~ 21328754 (+) True sec24b
XM_034309847.1 mRNA downstream 2616 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA downstream 2616 21405340 ~ 21413480 (+) True LOC117598821
XM_034309840.1 mRNA downstream 51394 21454118 ~ 21480442 (+) True LOC117598820
XM_034309811.1 mRNA downstream 79298 21482022 ~ 21513034 (+) True LOC113540568
XM_034309843.1 mRNA downstream 111849 21514573 ~ 21563801 (+) False LOC113540569
TU254301 other upstream 41817 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 42074 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 42074 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 42074 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 42074 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 243128 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 243356 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 244512 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 255778 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 257701 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile