RNA id: XM_026915992.2


Basic Information

Item Value
RNA id XM_026915992.2
length 2486
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC113527857
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 865213 ~ 882642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCAACAATAGAGATCTCGAACAAACATGGCAGTTCAGAATCACTAATTACTCCAGGGATTTCTCTTCAATCCTTCTACAGGAAAAGACTCTTGCAGcagaaattCCTCTCTCAAGAGTTTGGCATTTCCtctgagctcacacacactcaacggCTGCTCTCTCATTTCACACAGCGCTCGGTATACGAGAGAGGGGGATTTTCAAACGTCTTGAATGAGTGGACCTGTGGTGCTCAGCAAAGAAAACATCATCGTGTAAACTTTGCCTCTGAGTTTAGAGGAACTTTTAGAGAGTTTAGAACAGCGAGGAGAACTCGAGATAGTCCTGAACATCTGGGAGACTGACTCAGCATGGGCTAACCACCCCCATCTCATGCCTGCAAGAGCTCAGAGGCCCTGGACTGGAACAGGAGGATGAGTGTGTACACGCTAAACCTCAGGGTTTTCTGGCTTCTGGTCACTTGTGTCCTTGGCGTCCTACTGCTGCTTCATCATTTCGTCCTGCGAGGATCTGACGAACGATCTGATGGCTGCTCTGATCAGGGAACCGGATCCATCCCGCTCATCAAGTATGTCTTTGCCTTTGCACTGTGTTATTTCTTCATCAGGTACTGCTCATCTCAGCCTGGAACTACTAAACAAGGCATTCATGCCATTGCTGGAAAACCTACGGGTCCTAAAAGGGAGTTGTTGGAGGAGCACTTTGAGAGACATGTACGCCTTTCTCCACATGTTCTCGGCCACAGCAAGGCTCATGTGGCCAAGCTGGTGAGCGAGCTGGTGCGAGTCGGACGGGCCGATGTACTTCCAGAGTCCTCTCTGGCGTTTCGCGGGGACTTTATTCAGATTGGGAGCTCGTACGAGGAGCACAAAGTGGGCTCGCCGGATTGTTTTGACATCCTGGTCCCGCTTAGGCTTCCCCGAGGGCTCAAACTGGAGCCTTGCAGGTACGGTGACAACCGTTGTGGTGCACCACTGATCACTCTGGAGACGCCGCGTAAGGAGGAATGGCCACGGCGGCACAAAGTCTTCACGGATGCCTATCTGCGTTCAAACGGTTCACCGGGAGTCTACAGGTTGAGTCCGGACTCGGTGATGCGCTGGTTTTACTGTGCATCCCAGCGCTGCCTGTCAACCGTACGGTACCCATTTGAGCAGCGCTGCTTGCTCAGCCTTTCTCTCACTGAGGGACAGCGTGTACAGCTTCACCTCACACCACGATCCGACTACGTCTGCTGCCACATCTCCATGGGTGTTCGGCTCATCCCGGCACTTCCTCTGGGTGATTCCGCCTTCTTGGTCGCATGCCCCAGAGCTCAGCGTTCGGAAGACCTTTGGACAGTCTACTTCCCAAAGCAAGAGCAGAAGCTCCTTGGATGGTTGAAAGCCAAACTTCCCACCAGCTCCTGCCATCTCAAGTGCCTTCAGCTGCTCAAGGAAGTGCGAGACCTCGGCGGGCAAACGTTAGACCAAAAAGCCGGAGCCAAGTGGAAAGGGGTGCTTTCGTCCTACGTTCTGAAAACTGCCTGGCTACGTCTCCTGCTCAGCACGCCTTCTGAAGCCTGGGAAGACTGCCACCTGATGGACAGGATGGAAGATCTGCTGCGTTTTCTAAGAGACGGGCTACAAACCAGGAGTCTTCGCCATCTCCTCCTCGGTGGTGACAAAGGGCTACTACCCGAAACCGTCACATTGCCAAAGATCGTTAAGGAAACGGTGCCGTCTAACCTGTGGGCCGAATTCAGCGCCGAATCTCTGGACCTGGTCACTGCTCGGCTGTCCTACTCCTGGACTCATCTGCCTCGTTTAATCCGTCTCGGACGTCCACAGAGGACAACTCTGGGACGAGGGGTCCACTGTAAGCACATCGACGCTGAATAGGTGCTTTATTTCCAAACAGGGTCTCAGGTGTACATGTCTTGAAATCTCAGTTATCTGGCATCTTGTAGCATTAGGTGTGTTTTGCTAAAGTTGAGTGTAATAGGAAAATATGACTTCAGAGATGAAAATATGAGCAAGGGTTATGTTTTTTATCAAGCAGTATTTTGAAAAGCAGTTTTTATTCATTGGAGAAAATACAAGTACTGTATAGAATGCTGGTACAAATCCTTCTTAATGTACTGTATCTCAGAGGTCATGAAGGTCAGAAAGTTTAGAACAGCTCCAAGAGACACTTTGCTGCTTGAATTCAGGTCATGGGCTAaagatttctaaaaataattctcattggtgtgtgtgtgtgtgtgtgtgtgtgcgctctcaACCAAAGACCTGTTCAGCTGCGTTTTACAGGTGATATAATTTTCTACATGTGAAAGAGCTGGTTGAGTTTTGTGTTGACTCAGAAACATCATGTGGGAAGGGGACAGTCAGAACAGGTTTAACGCCAGTGAGGTCAcaaatttccacacacacacacacacacacacacacagacacacacaaaactccacTGTTTTCCCCTGCAATCTGAAGAAGACCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240820 lncRNA upstream 58868 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 59358 805200 ~ 805855 (+) False setd1a
TU240807 lncRNA upstream 91189 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 121473 741832 ~ 743740 (+) True G203339
TU240781 lncRNA upstream 126486 738339 ~ 738727 (+) True G203321
TU240787 lncRNA downstream 176037 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 178548 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 227887 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 426755 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 479741 1362383 ~ 1441015 (+) True G203647
XM_034309744.1 mRNA upstream 15333 812026 ~ 849880 (+) False hsd3b7
XM_034309745.1 mRNA upstream 15333 818661 ~ 849880 (+) False hsd3b7
XM_034309746.1 mRNA upstream 15333 823974 ~ 849880 (+) True hsd3b7
XM_034309705.1 mRNA upstream 59060 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA upstream 59060 778913 ~ 806153 (+) False setd1a
XM_034309735.1 mRNA downstream 6619 889261 ~ 911910 (+) True syt17
XM_034310159.1 mRNA downstream 58378 941020 ~ 997685 (+) True smg1
XM_034309756.1 mRNA downstream 117447 1000089 ~ 1014745 (+) True arl6ip1
XM_034309762.1 mRNA downstream 139284 1021926 ~ 1034215 (+) True elob
XM_034309708.1 mRNA downstream 151694 1034336 ~ 1056334 (+) False armc5
TU240808 other upstream 107155 753275 ~ 758058 (+) False fus
TU240780 other upstream 132359 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 154770 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 188374 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 337593 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 164163 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 337870 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 470692 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 678952 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 1000433 1883075 ~ 1885478 (+) False ccndx

Expression Profile