RNA id: XM_026915997.2


Basic Information

Item Value
RNA id XM_026915997.2
length 3308
RNA type mRNA
GC content 0.47
exon number 18
gene id ldlra
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11773079 ~ 11785047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTAGTACCGGCACTGGCGAGTAAAAGCGCACTATATTTTGTCGTACTAATAATTGTGAGTTTAGTAGctacttttaaaaattaaaatacttaaaaataacCCACAGAACACAGGTCTAcgaaaaactatttttaataattatcgTAAACATAACGTGGAGCAACGCGGAGAGGCTGctgacactttattaggaaactatggaaaagactttatttttgttcttcctGATATATTTAACATGCCCAGTTCAAACAGAGGTTGGACCCTGCGGCTCAAGGAATTTCCAGTGCGGCAATGGGAAGTGTATTACGATGAGATGGATATGTGATGGTACAGACGACTGCGGTGATGGCACTGATGAGCTCCCTGCTTCCTGCATGGCAAAGACATGCAAACCCAGTGAGTTCCGCTGTGGTGGACGGTTAAACCAGTGTGTGCCTAACAGCTGGAAATGTGATGGCAAGGCAGACTGTGAGAACGGAGCCGATGAAGCCGGCTGCAGTCCCAGACAGTGTCTGAATGGTGAATTCCGCTGCAGCaatggtcagtgtgtgtctcaggctTTCGTCTGTGATGAAGATGCTGACTGTGATGACGGCAGTGATGAAGCGCAGTGTCAGCCCACTACCTGCAGCTCGACTGCTTTTCGCTGCAACAACTCAGTGTGCCTGCCGCGCCTGTGGGCCTGTGACGGAGATACTGATTGTGCAGATGGTTCAGACGAGTGGCCTCAGAACTGCGGCCACCGACCTTCTCCATCTCCCAGTAGGCCCTGCTCCAATATGGAGTTCCATTGTGGCATTGGGGAATGTATTCCAAACCCCTGGAGATGTGACGGAGATCCCGACTGCCCCGATCAATCAGATGAGAAAGACTGCGCCGTATCCACATGCCGGCCAGATGAGTTCCGCTGTGGTGATGGATCATGCATCCACGGGAGCCGCCAGTGTAACCAGGTGTATGACTGTCAGGATATGAGTGATGAACTGGGCTGTGTCAATGCAACCCATTGTGAAGCACCATCCAGGTTTCAGTGTCGCAGCGGTGAATGCATCAGCATGGACAAAGTTTGCGACAAGCGGCGTGATTGTAGGGATTGGTCCGATGAGCCACTGCGTGAGTGTGATTCTAACGAGTGTCTGTACAACAATGGTGGCTGCTCTCATATCTGTAATGACCTAAAGATTGGCTACGAGTGCTTGTGCCCCAGTGGATTCCTCTTGGTAGACAAGAAACGCTGTGAAGATATTGATGAGTGTGCCAATGGGGACACATGCAGTCAAATCTGTGTGAATCAGGTGGGCAGCTACAAGTGTGAGTGTGCTGAAGGTTACCAAGTAGATCCAGCAACCAAAGCCTGCAAAGCTATTGGAACTGTAGCCTATCTATTTTTCACTAACCGCCACGAGGTGAGGAAGATGACTCTGGATAAGAGTGAGTACACGCAAGTCATCTCACGTCAGAAAAACATAGTAGCACTGGACATGGACATCGCCAACAAGGAGATCTTCTGGTCTGATCTGTCCCTCAAGAAAATTTATAGAGCTCCCATGGATGCAGCGTTAGACTCATCTCAGCATAGCACTGTGATTGACTCTGGCTTGGGTGCACCCGAGGGGCTTGCAGTGGACTGGATCCATGGTAATATCTACTGGACAGATAGTGTACGTGGTGCCATCTCTGTAGCCACAGCAGATGGAAAGAAGCGCAAGACGCTCTTTGGAAAAGACCTGACCAAGCCAAGAGCTATTGTGGTTGACCCAATTAAGAATTTTGTGTACTGGACTGACTGGGGTACGCCTGCTAAAATTGAGAGGGGCGGCCTGAATGGAGTTGATCGCAGCACTTTGGTGTCTGATAACATTGTCTGGCCCAATGGGATAACTCTTGATCTGTTGAACCAGCGTCTGTACTGGGTGGACTCTAAACTGCATACCCTCGCCAGTATTGATGTGCAGGGAGGTGGCCGTCGTACACTCATTCTAGACCAGGGCCGACTGGCACATCCACTTAGTGTCACAGTGTTTGAGGAGCGAGTATTCTGGACTGATGTTAGCAACAATGCTATTCTGAGTGCTAACCGTGTGACAGGGGGAGACATCACAAACGTAGCAGAACACCTCACATCTCCAGAGGACATTGTGCTGTATCACAACCTGAAGCAGCCCAGTGCTGTGAATTGGTGCAAGTTCAACAATGGTGGCTGCGAGTTCCTGTGCTTGGCTGCACCACAGGTCAGCGTCTTCTCACCCAAGTACACATGTGCTTGCCCTGATGACATGATGCTGGACAAAGATATGAGGAAATGTGTCCCTGCTGTTccaacaacagcaccaccagtcCAGCCCAAAGTTCCCACCACAGGCCGCCCTCATATAACCCCACATACTACACCAAAAACATCTGCCCCAAGAACCACCAAAACTTCAGTTCCAATCGTCACCACTGCGGCGAAGACACAACCCACAGATGCAGCCAGAGCCAAAACCCCCACAGTCAACACTCATTATGAAGTGACCACACAGACAAACAGTCACAGTGCTGTTGCAACAGTCAGAGAAGAATCTTCTACACTGCTGGCTCTTTACATTGCATTGCCCTTCGTGGTTTTATGCCTCCTGGGATTTGGTGGCTTGTTGCTGTGGAGGAACTGGAAGCtgaaaaacaccaacaccatTCATTTTGAAAATCCAGTCTACCAGAAGACCACAGAGGATAAAGTTCACATCTGCAAGAACTACAGCTCTGATGGCTACTCCTACCCACCGaggcaAGTTGTCAGTCTTGATGATGAATTATGAACTTTACCATCTATGCTAATACTGACTACACAATCTGAAGGTGCTGCAGTAACAAGCTGGAACAAGCTCAATGAATGGATGTTTAGAGATTGTTGTTGTGTCCAAGGACACTAAATCACTTTTTTAGAGGCAATTCCTGGGGCAGGCTCGTCCAGGCTCATCCACTGCAGGCTTCTATGAAACACAGGGAAACAAAGCAACCTCAAAAATCATTGACCTCTCATATATTCTTAACTTTtcaaagagaaagggaaagaatgAGTGTATATGTGGTATGTGTATGTAAGACAAGACTGCAGTATTGTTAAATAGAGTATTCTCACTGAAGAAATGTTGTAAATATTGTGTATGTggagttttacatttttgaatGCATTGTAAATACTAGTTCACACACCACTATAtggtatacactatatggccataagACCTTTGctgatttagtccccctttgctattataataatgtccactcttctgggaaggctttccactggatattggag

Function

GO: NA

KEGG:

id description
K12473 LDLR; low-density lipoprotein receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248316 lncRNA downstream 107950 11664485 ~ 11665129 (-) True G209646
TU248307 lncRNA downstream 125082 11642168 ~ 11647997 (-) True hmox1a
XR_003402897.2 lncRNA downstream 147011 11619540 ~ 11626068 (-) True LOC113527962
TU248298 lncRNA downstream 147266 11619646 ~ 11625813 (-) False LOC113527962
TU248294 lncRNA downstream 155891 11610634 ~ 11617188 (-) True G209624
XR_004579362.1 lncRNA upstream 60526 11845573 ~ 11879417 (-) True LOC117598828
TU248548 lncRNA upstream 283207 12068254 ~ 12068622 (-) True G209829
TU248549 lncRNA upstream 283766 12068813 ~ 12069180 (-) True G209830
TU248551 lncRNA upstream 285249 12070296 ~ 12070602 (-) True G209832
TU248558 lncRNA upstream 291625 12076672 ~ 12077073 (-) True G209839
XM_026917283.2 mRNA downstream 9256 11753043 ~ 11763823 (-) True kri1
XM_026916218.2 mRNA downstream 21655 11745491 ~ 11751424 (-) False spc24
XM_026916219.2 mRNA downstream 21677 11745491 ~ 11751402 (-) False spc24
XM_034309686.1 mRNA downstream 21704 11745491 ~ 11751375 (-) True spc24
XM_026916973.2 mRNA downstream 71907 11699849 ~ 11701172 (-) True zgc:162612
XM_026916879.2 mRNA upstream 5528 11790575 ~ 11809016 (-) True smarca4a
XM_026916880.1 mRNA upstream 5528 11790575 ~ 11804821 (-) False smarca4a
XM_026916882.2 mRNA upstream 5528 11790575 ~ 11796996 (-) False smarca4a
XM_026916878.2 mRNA upstream 6307 11791354 ~ 11809016 (-) False smarca4a
XM_026916884.2 mRNA upstream 25160 11810207 ~ 11825779 (-) False il12rb2l
XR_003402968.1 other downstream 17156 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 71978 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 206951 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 236401 11536560 ~ 11536678 (-) True LOC113528647
XR_003402978.2 other downstream 340451 11432510 ~ 11432628 (-) True LOC113528663
XR_003402971.1 other upstream 240455 12025502 ~ 12025572 (-) True LOC113528656
TU248755 other upstream 514958 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 548811 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 763782 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 763782 12548829 ~ 12559213 (-) False tom1

Expression Profile