RNA id: XM_026916001.2


Basic Information

Item Value
RNA id XM_026916001.2
length 2468
RNA type mRNA
GC content 0.48
exon number 14
gene id engase
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18938571 ~ 18954755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agccaatcagagttaATGCGGAAGCTGGTGTCTCTGAAGTCAGATCTTCAACTTCATTATTTTCTGCAAATCTGAGGAAAGCGGTTATTTGTTATGGACGGTGACtcgaaaagaaagagagaggaaactgAGGATGCAGGTGGAAAGATTGCTAAAACAGAAACCGAATATGAGGCAGAGGATCAGAGAAGTGTCCATGAAGTCATAACCTTCAAGTCGTCTCATCTATCAGAGCAGCACTATGATAAGGACACAACCGAGCCCATCAGCACTGCCTTGAAATCTTTAGATGAGCTGCGGTCCTGGAAGAGCAGCGATGCAAATCCGTTCAACGTGGCCACCGTCCCGTTGGAGAAAAGATGGCCGTCGCTGAAAGACTCTCGGATGAGGACGCTCGTCTGTCATGACATGATGGGAGGATACCTGGAGGACAGGTTTATTCAAGGTACAGAGGTGGACACACCGTACGTGTTCTATCACTGGAAATATATCGACATCTTCAACTACTTCAGCCATCATATGGTGACCATTCCTCCTGCCATGTGGACCAACGCTGCTCATAAACACGGCGTGCTCTCGCTAGGCACCTTCATCACAGAGTGGACGGAGGGAGAGAAGATGTGTGAGAAATTCCTGGACGGAGAGGAAAAGTATCGCTCAGTTGCTGATAAACTGGTGCAGATTGCGCACTGTTACGGCTTCGACGGCTGGCTCATAAACATAGAGAATGCGCTGAGTaAACGTTCTGTGAAACACATGGCTCCGTTCCTGCGCTACCTCACTGATCAGATGCATAAGCAAGTTCCCGGCAGTCTGGTGATCTGGTACGACAGCGTTCTGGAGGACGGTACTCTGAAATGGCAAGACCAACTCAACGACAGCAACAGAGTGTTTTTTGATGCGTGCGATGGCATTTTCACCAACTATAACTGGACGGTGAGCAGTCTGGAGGATATGGCGTCCGATTCAGCAGCACAGGGGCGTCTGGCCGATATTTACGTCGGCATCGATGTGTTTGCAAGAGGAGAGGTAGTGGGAGGAAAGTTTGAAACGAATAAGGCTCTTGAGCTGGTGCGTAAACATGGACTTTCTACAGCCATTTTTGCTCCTGGTTGGGTTTACGAGTGCCACGACAAGGTGGATTTCCGCAAGAACCAGGACAAattttGGGGCTTGTTATCAGACTTCCTCTACATTCACCGTCCTGAGTGTCCTCTTCCCTTTGTCTCATCGTTCTGTCAGGGTTATGGAAAGAATTTCTACTGGAGAGGGAAGGTAGAGCAGGACAGAACCTGGATGAATCTGAGTGCTCAGGAGCTGCAGCCTCTTTATGTGATGGAGAATTTGGAGGGAGGAGGCTGGTTTCAGACTCGAGGCTGCTCAGAGGAAGTGTGGACTGGAGGGAGTTCACTAGTGCTAGAGGGGACCATGCCCAAATCCCTGTCCAAAATCTGTGCCAGGATACTTTCACTGCACGTGCCATTGGCCTCAAGGATGTTCATCTCATGCGTCTATCATTCATCAGACAGAGTGAATATCTCTTTAGAGCTCAAAACCACAGACGCTgctccctgcacacacacagggagtgACGAGATGCAGAccagTAATGTGATTCCAGAGGGGTTGGATGAAGATCATGAGCTTGTGAAGCAGTTCACTCGGAGCTGTGGAGAGCGGAAAGCAAATGGCTGGATTACCAGgtgtttccTCCTGGAGGGGACCGGTTGTGCcctgagagaggtgtgtgtcagtgtgtctcGAAAAGACGAAGAATCACAGGATCTTCCATTTAACTGTAGGATCGGAGAGATCATGGTGTTGGATGCAGAGAGTCTCTTCAACCCTCTGTTGCCCATCCAGAGCATGCGTGTGCGTGATGTGGTGTGGCATAAAGGAGATGTTGATGTAAATGGAAAAGCCGCAAAGGTATTTCTGAGCGCTACACTAACCTGGCGCTACCCGACTCAACTGGCACGATATTTTCGTGTGTTTTGGCGTCATGTACGCGGTCCTGACCCGCGAGTTGGGCCTGGACCGGCCGTGCCTATCGGCCGGTCGTATTCACCACAGTACCGTGTGGTTGAGCTTGAGGTTGAACACGCGGCTGGAGTGATGGAGCTGCTGGTGGAGCCGGTGCGCAGAGAAGGCTTCAGCTTGCCCGAGTCGCACTGGGGGAGACAGACACTGAGCTATACACACTCCACTGATACATAAACATACCCATACTGTATAcgcaaagatttttttttttagtgcactTGCTCCATGTTGTATTTTAATTGTAAAGCAACTCTGAGTGTGAGAAAAGTGCAACGCATCATTTCaagtatttttgtattattaatgtctttGAAAGAAATTCTGAGtggtttttactttaaaaatcatgggggttttttaaatacattttttatatttagaaaatatgtgttttttttaataaaatacttttgcCTGCCTCTTCA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K01227 ENGASE; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252548 lncRNA upstream 40280 18846216 ~ 18898291 (+) True G213244
TU252523 lncRNA upstream 224945 18706417 ~ 18713626 (+) True G213221
TU252491 lncRNA upstream 372789 18517313 ~ 18565782 (+) True G213191
TU252492 lncRNA upstream 404227 18530359 ~ 18534344 (+) True G213192
TU252290 lncRNA upstream 510945 18425239 ~ 18427626 (+) False zgc:163143
TU252634 lncRNA downstream 4275 18959030 ~ 18960740 (+) True G213314
XR_004579329.1 lncRNA downstream 124707 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA downstream 124855 19079610 ~ 19081890 (+) False LOC117598754
TU252813 lncRNA downstream 152455 19107210 ~ 19161120 (+) True G213475
TU252837 lncRNA downstream 316576 19271331 ~ 19271589 (+) True G213498
XM_034310064.1 mRNA upstream 18629 18915854 ~ 18919942 (+) False smim22
XM_026916707.2 mRNA upstream 18629 18915866 ~ 18919942 (+) False smim22
XM_026916705.2 mRNA upstream 18629 18915866 ~ 18919942 (+) False smim22
XM_026916706.2 mRNA upstream 18629 18915866 ~ 18919942 (+) False smim22
XM_026916207.2 mRNA upstream 38590 18877674 ~ 18899981 (+) True rgs9a
XM_034310299.1 mRNA downstream 16643 18971398 ~ 18980644 (+) True coil
XM_026916029.2 mRNA downstream 27118 18981873 ~ 19026526 (+) False rab11fip4a
XM_026916028.2 mRNA downstream 27842 18982597 ~ 19026526 (+) True rab11fip4a
XM_026916030.2 mRNA downstream 41619 18996374 ~ 19026526 (+) False rab11fip4a
XM_026917224.2 mRNA downstream 127843 19082598 ~ 19097768 (+) True suz12a
TU252614 other upstream 18699 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 18699 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 596634 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1829296 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2793187 16140330 ~ 16145384 (+) False LOC113527983
TU252829 other downstream 189319 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 346600 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 951447 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 979069 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 1023559 19978314 ~ 19981380 (+) True G214015

Expression Profile