RNA id: XM_026916007.2


Basic Information

Item Value
RNA id XM_026916007.2
length 1942
RNA type mRNA
GC content 0.52
exon number 7
gene id otop2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14900833 ~ 14909395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGCTCTAGGCATGATGAGCACCAAAGAGGAGCCAGAACTTCAGGAGAGCCAGATCTCCACGGTGCAACATGCAGGGACGCACATGGCGCGTGGCACGCGCTCGGCCAGCATCGCCCTGTCCTCCACCGGCTCATGGCGAGACTCGACGCGCAGCTGGGGCTGGCTGCTGTCCGGCGCCGTGCTCGTCAACGTGCTCGCGCTCGGATGCGCGCTCGTCGGCGCCAGCGTGTTTAACGCGCAGCACGTCACCAGCGTGCACCTGCAGCTCTACCTCGTGGTGCTGATCCTCTCCACTACCGTCTGGATAGTCTTCTACAAGGCGTACACGTGCCGCGAGGACGACGCCGTGCTCTACAAGGATATGCACGCAGGGCCCGTGTGGCTCagagGTGGCCTGGTGCTGTTTGGAATCTGCAGCTTAATCATGGACGTTTTTAAGGTCGCCTTCTATGTGGGTCATGTGCACTGTGACTCACCTGTGAAAATCGTCTTCCCTGCTGTGCAAGCCATGTTTATTCTGGTGCAGACTTACTTTCTCTGGCTCCATGCCAAGGATTGTGTGCAAGCGCAGAGAAACATAACTCGCTCTGGGCTAATGCTCACCTTGGCCACAAACCTGATGATATGGATAACTGCAGTGACAGAAGAGTCTCTCCATCAAACAGTCTATCCCAATGATACTCGTAGCCTCGGTTCCCGGAGTCTCTCAGTTAGAGCTAGCGCTTCTGAAGGCGACAGCAGTTGTGTATGCAGTCTCACGGCATGCAAAATCTTCGAAGATGCGTACTATTACCTCTATCCATTCAACATTGAGTACAGCCTGTTCGCCTCAGCTATGGCGTATGTGATGTGGAAAAACGTGGGCCGGCTGGTGGATGACCACGGGCATCATGAACACCGCTTCCACATGCGTGACGTGCTGGTAGGCCCAGCCAGTGGCCTCCTGGTGTTGGTGGCTGGCCTGACCATATTTGTGGTGTACGAGGTGGATGTATCATCTAATGAGCCAGGGAAGACGGACACGGCTCTCATTATGTACTACGTGGCCAACACAACTACAGTGGTCCTGATGACTGTGGCAGCAGTGGCCGGTTGCACTCTGTACCGGCTGGAGCAGCGTGAGCATGCAGTGGGCAAGAACCCAACACGCAGCCTGGATGTGGGGCTGTTAGTGGGAGCCTCTGTAGGCCAGCTCACTGTCGCCTACTTCACCATTGTGGCCGTGTTGGGAATCGGTGTGGGCGGCCTAGTCAACGCACTCAACCTGGCCTGGAGCGTGCTCAATGTAGTCGAGCTTTGTGCACAGAATGTGTTCATCATTGAAGGCTTGCGGCGGGAGCCACACCAGGACACACGCCGTGCCAGCATCTTCTCCAATCTGCTCGCCTTGCAAGCACACGATGAGCGCAGGAGGTCCAGCAATGTGCTCACGCCTCGTGGCTCCATTGCCATCTCGGTCCACAAGCCCCTGCCCTGGAAGAGGAAGCTTCTCAAGGAGGTCTCATCGTTCCTGCTGCTTTGCAACATTATTCTTTGGATCATACCTGCCTTCGGAGCACGGCCACAGTTTGACAACCCCCTCGGAGTGAATTTCTACCAGTTTGGCATGTGGGTGGCTGTGGTTAACATTGGACTGCCTTTTGGGATCTTTTACCGCATGCACTCAGTAGCCAGTCTTTTTGAGGTGTACCTTACCTCTTGAATCTACAGCCTTAGACAATACCTGTTCATATAACTTTTATAAATAGTTTATAAAAGATTTTCTTGTAAATGATACAATctatttttttatgcttttttgtcttttaatatttacttgGAAACTGAATGAAGAGCTTGTGTAAAGATTTGTGCATCTTaggtgtagtgtacagtactgtgcaaaggtcttaggcaccctattttttttttttttagtacaaactttgttatagatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250308 lncRNA downstream 53377 14847252 ~ 14847456 (-) True G211274
TU250303 lncRNA downstream 56521 14827235 ~ 14844312 (-) True G211269
TU250196 lncRNA downstream 279051 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA downstream 279051 14619774 ~ 14621782 (-) True G211195
TU250187 lncRNA downstream 306169 14588820 ~ 14594664 (-) True G211187
TU250394 lncRNA upstream 25292 14934669 ~ 14935121 (-) True G211346
TU250411 lncRNA upstream 69242 14978619 ~ 14983132 (-) True rac1b
TU250397 lncRNA upstream 91568 15000945 ~ 15001328 (-) True G211349
TU250420 lncRNA upstream 125792 15035169 ~ 15036895 (-) True G211363
TU250752 lncRNA upstream 435132 15344509 ~ 15344731 (-) True G211688
XM_026916168.2 mRNA downstream 22710 14875335 ~ 14878123 (-) False LOC113527964
XM_026916167.2 mRNA downstream 22710 14875335 ~ 14878123 (-) True LOC113527964
XM_034309676.1 mRNA downstream 60464 14768607 ~ 14840369 (-) True LOC113528036
XM_026917126.2 mRNA upstream 22539 14931916 ~ 14934161 (-) True amn
XM_026917169.2 mRNA upstream 32526 14941903 ~ 14947534 (-) True LOC113528557
XM_034310190.1 mRNA upstream 45681 14955058 ~ 14972584 (-) True LOC113528182
XM_026916674.2 mRNA upstream 70248 14979625 ~ 14986112 (-) False rac1b
XM_026916124.2 mRNA upstream 128993 15038370 ~ 15051643 (-) True cacng5b
XR_004579411.1 other downstream 210701 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 379858 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 410058 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 871192 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 894321 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 562400 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2383474 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2383474 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2383474 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2383474 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile