RNA id: XM_026916009.2


Basic Information

Item Value
RNA id XM_026916009.2
length 2670
RNA type mRNA
GC content 0.47
exon number 4
gene id ush1ga
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14912189 ~ 14920677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAACCGTCGCGAGCGTTCCCAGGCCGCTCGGTGCACACGGCCTTAGCGAAAGACGCTTGCCGTCCAGTGCCGATGACTCCCGAAGACTGGGAGTAAAAACTCAAGCATAATGGAGGCCGAAGTGCGAGAGCAACATGAATGACAAGTACCACAGGGCAGCGCGAGATGGCTACCTGgacctgctgaaagaggccacgcGGAAGGACCTGAACGCGCCGGATGAAGATGGCATGACACCGACGCTCTGGGCCGCGTACCACGGCAACCTGGACGCGCTCAGGCTCATCGTGGCCAGAGGAGGGAATCCTGATAAGTGTGATATATGGGGGAACACGCCGCTCCACCTGGCCGCTTCCAATGGCCATCTCAACTGCCTGTCCTTCTTGGTGTCCTTTGGTGCAAACACATGGTGTTTAGACAATGACTACCACACGCCTCTGGACATGGCTGCCACCAAGAACCACATGGACTGTGTACGCTACCTGGACTCCATTGCTGCCAAGCAGACAGCTCTCAACCCCAAGCTGGTGGCCAAGTTGAAAGACAGAGCCTTCCGTGATGCCGAACGTCGCATCAAAGACTGTGTCAAGATGCAGCGCAAGCACCACCGCCGCATGGAGCGCAAGTTCCAGAAGGAAGCCACAGATGCTTCGCTTTCTGATGCCATGAGCTTCTCCAGCTACACCAGCAGCACTTTTAGCCGCAAGCTGCACCCCTTCAACACTGCCACCAGTGTGCCATACTCACAGGCTACCCTCCATGCCACAGCCAGAGGCAAAACCAAGATCCAGAAGAAGTTGGAAAAGAAGAAGCAGGGTGATGGGACCTTCAAGATCTATGAGGATGGAAGGAAGAGTGTGCGCTCTCTTTCTGGTCTACAGCTGGGTAATGATGTCATGTTCCTAAAGCAGGGTACCTACGTAAACCCAAAAGACCGTGGTCGGCGAAATGTCCGTGATATGTTCCCACGGGACAATGAGGATGCCATCTCGCGTGCCATCAGCGAGCCGGACCTGCATGGGGCAGACATGGACCACTCAGAGATCAGCACTGACTCGGGCCATGACTCGCTTTTCAACCGGCCAGGCCTGGGTACCATGGTCTTCCGGCGGAACTATGTGAGCGGGGGACTCTTTGACATAGGCTCTCGTGATGAGGGCAGCATGGCCGGCAGTGCAAGGGCACCAAATGTCCGTCTGCGCAGCCGTCTTCAGCGATCTCCCAGCGTAGATGAGGATAGTATCGGCAGTGCTCGAAGCCTCCAGGCAAGGAACATGGAGGAGCTTCCCTGGGATGAGGTGGAATTAGGACTGGATGATGACGATGAGCCAGAGAGTAGTCCACTTGAGGTATTCCTGGCTGCACAGTGCATGAACGAGTTCATCCCTATTTTTAAGCGAGAGAAGATTGACCTGGATGCACTGCTGCTGTGCTCTGACAGTGACCTCAAAAGCATCCACATTCCCTTGGGACCTCGTAAAAAGATCATTGATGCGTGCAAGAGACGCTTGGACACCATTGAGGATCCCGACAGCATAGAAGACACAGAGTTATAGCACAAAGGACTTGTTACTCTGTGATTTTGGCCATACCGATGGTACGTCGCAATTCACGTGCAACAGGACAGAAAGACGCTCACGCTGAACGGAAGTGTAACCCTTGTGTGGATTTCAAACAAACAATGGTGCATGTCTCATTACCATAGGAATAAATTTTGAATATGACAATAATACCTCCTTGACTGGCACACACAATGAAGCATGCAGGCCAGCAGTAACAGCTGAATCAAGCTGAGGTTCCATGATTGCCATACATAACAGTAAAAATCCTGCTGAAATCCCTGATGAAGTCAGACCCAATCAGCATCATTCTCATTATGTCTGCCCCTGTGGGGCATGAGTCTTAGTGCCTGTGCTTCCAGTGCATGCACATATCTCTGTTAATTGTAATTTCATGCATGATGTATTGTATTATAAGATATTTTTATGACAAACTCAGAAGATTATGCTGAATATGAGGCATGCATAGGCAGATTTGAAAAGCTTGGGTTTCAAATCCAGGAACTTTTTACACACTGCCTGTCAAACACAGATTATAGGTCGCCAATATACATGGCAACAAATGTGGGAACCCTGTCTATACAGGTCAGTGAATGCCTGAACTTTTTGACCTCCAttagtttgtttacatttgtcAAGCCATACTTATGTTAAAGATTTGGGGCATAGGTATTTTTGGTGGTACATAAATCGTACTTCTTGctgatttctgtttttctctttgttttttgtttttttttcactcatgcCATATTGCTACAGAGAAATTTTCTTTCAACATGCTATTAATCTCACATAAACCTATGTATATTTGGTATACAATACATGTATAGATTTCAGTACATTCCAACCCAAATAGTATGTGCTATTTCTTGTACATAACTtttgttcatgtgttttatataatttcataaaATGTAGCAATAAAAGAGGCAAACTAGCACTGAAAATCCATgaaattttgtattatttttatggGCATACTTGAAGACAATAAACTTGTAATATGGCTGTTTCAGTGAACAGTTTTGTAAGAGTAGCTCATGTAGAGTTTTTATATGTcagaaaataacaaaaccaTAATGGAATAAACACTCTatacatttaaa

Function

GO: NA

KEGG:

id description
K21878 USH1G; Usher syndrome type-1G protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250322 lncRNA upstream 11883 14899776 ~ 14900306 (+) True G211287
TU250264 lncRNA upstream 67627 14844422 ~ 14844562 (+) True G211247
XR_003402895.2 lncRNA upstream 67817 14841252 ~ 14844372 (+) True LOC113527943
TU250263 lncRNA upstream 68900 14838290 ~ 14843289 (+) False LOC113527943
TU250262 lncRNA upstream 68900 14841452 ~ 14843289 (+) False LOC113527943
TU250378 lncRNA downstream 67409 14988086 ~ 14991269 (+) False LOC117598752
TU250373 lncRNA downstream 67467 14988144 ~ 14991403 (+) False LOC117598752
TU250374 lncRNA downstream 67467 14988144 ~ 14991450 (+) False LOC117598752
TU250376 lncRNA downstream 67467 14988144 ~ 14991269 (+) False LOC117598752
TU250383 lncRNA downstream 89465 15010142 ~ 15010651 (+) True G211338
XM_026917065.2 mRNA upstream 12457 14878966 ~ 14899732 (+) True hid1a
XM_026917066.2 mRNA upstream 12457 14878966 ~ 14899732 (+) False hid1a
XM_026916947.2 mRNA upstream 290401 14619204 ~ 14621788 (+) True socs3a
XM_026917131.2 mRNA upstream 311182 14534573 ~ 14601007 (+) False cyth1a
XM_026917124.2 mRNA downstream 6876 14927553 ~ 14932006 (+) True LOC113528525
XM_026917170.2 mRNA downstream 14560 14935237 ~ 14941094 (+) True zgc:112148
XM_034309966.1 mRNA downstream 53899 14974576 ~ 14979006 (+) False stk19
XM_026916192.2 mRNA downstream 53900 14974577 ~ 14979006 (+) True stk19
XM_034309689.1 mRNA downstream 67424 14988101 ~ 14991448 (+) True LOC117598752
XR_004579399.1 other upstream 1419339 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 2723600 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 3334366 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 3375024 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4494308 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 892565 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 997540 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 1219653 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 2166614 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 3263342 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile