RNA id: XM_026916022.2


Basic Information

Item Value
RNA id XM_026916022.2
length 1786
RNA type mRNA
GC content 0.50
exon number 11
gene id tmem104
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11963695 ~ 12012976 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGGAAGAGACCCCTCCCATCAGGATACAAACTTTTCATCATCACGCTTTAAAAGTGCTCAGTCAGAATAACTATGTATTAATATGCACCCAAACCGTGGCAGCAGAATGTCCTACAGCATTACAGAGCCACCAGTTTcccttttaatttgtcacctCTATCATGCTAACCCATGACTAGCCAGTTGGCGACGTAGCAGCGGATTTGATGAGCTGTGCAGTAAGTGAATTAGCACAGCTGTCAGGAAGCACCGGGTATCCTCTGtgaattgtgttgtgtttgaacACTTTGACAACATGGCTGGTGGCATTACAGAGACAGGAGAGCCATACTCCCCTTTTGTTGGCTTGGTGTACATGTTCAACATAATCGTGGGCACTGGTGCTCTAACCATGCCCAAAGCCTTCGCCACTGCTGGTTGGGTTGTAAGCCTGGCGCTCATCTCCTTTTTGGCTTTCATGAGTTACATGACCACTACATTTGTGATCGAGGCCATGGCTGCAGCCAACGCCCAGCTACGCTGGAAGAGGAGAGAGCAGGAAGAGATCAATAGCAGTGACTCTAGTTCTGACTACTCGGATGATGAGGAGGTCACCTGCAGGGGGCGGTCAAATCCAGTGGAGACTCGACCGATTCTCTCCGTTCAGCGTGCAGGGTCAGTGGATCATTTTGATATTGTGGAGAGAGTTGAGATGGGACAAATGGCCTCCCTGTTTTTCAATAAAGTTGGCGTCAATATGTTCTACATCTGCCTCATTGTATACCTGTATGGAGACTTGGCCATCTATGCCGCTGCTGTGCCCGTGTCCTTGATGGAAGTGGCCTGTGGCAATCACTCCTGCAGCGCTGGGAGTATAAAATACAACGACACTGAGGCATGCTGGGGGCCAGTGAGCCGGAAAGATGCCTACAGAGTTTTTCTCGCAGTCTTCACACTACTACTGGGACCTTTCACATTCTTCAATGCACAGAAGACCAAATACCTTCAGATCCTCACCTCACTAATGAGATGGATTGCTTTCACCATGATGATAATCCTGGCGCTGATCCGCATCTCAAAGGGCCACGGTGAGGGCCATCCTCAGGTGGCGCAGCTCAGCGGAGTTCCCAACCTCTTTGGCGTATGTGTGTACTCCTTCATGTGCCAGCATTCGCTGCCCTCTCTGATAACGCCTATCTCAGACAAACGGAGGGTGACCATGCTGCTAACGGTGGATTACGTGCTCATCCTGGCCTTCTACAGTCTGCTTTCCTTTACAGCCATCTTCTGCTTCGACAGCTCGCTGCTGCGAGACATGTACACGCTAAACTTCACCGATAACTGTGACGTGCTGGGTGTGGCCGCCCTCCGCTACTTTTTAGGACTATTCCCCGTCTTCACCATCAGCACGAACTTCCCTATAATCGCAGTCACGCTGCGCAACAACTGGAAGACGCTCTTCCATCGAGATGGAGGTACCTACCCATGGGTAGTGGACCGCATTGTGTTTCCCTTGATTACCTTGGTGCCACCTATTGTGGTGGCATTTTGTACTCATGATCTAGAGTCTCTTGTAGGCATCACTGGAGCTTACGCAGGCACAGGCATTCAGTACATCATTCCTGCTGCCCTGGTGTTCTTTAGTCGGCGCCACCTAGAGCCTGTGTTTGGAAGGGATGTGCAGAATAAGCACAGGTCTCCATTCCATCACACATTCTGGGTCATATTTGTGGTGATCTGGGCGATTTCTTGTCTGATGTTTGTCACAGCTAATATCATACTGACAGCAGAAAACAAGAACTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579362.1 lncRNA downstream 84704 11845573 ~ 11879417 (-) True LOC117598828
TU248316 lncRNA downstream 298992 11664485 ~ 11665129 (-) True G209646
TU248307 lncRNA downstream 316124 11642168 ~ 11647997 (-) True hmox1a
XR_003402897.2 lncRNA downstream 338053 11619540 ~ 11626068 (-) True LOC113527962
TU248548 lncRNA upstream 55278 12068254 ~ 12068622 (-) True G209829
TU248549 lncRNA upstream 55837 12068813 ~ 12069180 (-) True G209830
TU248551 lncRNA upstream 57320 12070296 ~ 12070602 (-) True G209832
TU248558 lncRNA upstream 63696 12076672 ~ 12077073 (-) True G209839
TU248554 lncRNA upstream 70760 12083736 ~ 12084702 (-) True G209835
XM_026917039.2 mRNA downstream 136014 11826285 ~ 11828107 (-) True rln3a
XM_026916884.2 mRNA downstream 138342 11810207 ~ 11825779 (-) False il12rb2l
XM_026916883.2 mRNA downstream 138342 11810207 ~ 11825779 (-) True il12rb2l
XM_026916878.2 mRNA downstream 155105 11791354 ~ 11809016 (-) False smarca4a
XM_026916882.2 mRNA downstream 167125 11790575 ~ 11796996 (-) False smarca4a
XM_026916695.2 mRNA upstream 2225 12015201 ~ 12032758 (-) False tnpo2
XM_026916696.2 mRNA upstream 2225 12015201 ~ 12032758 (-) True tnpo2
XM_026916587.2 mRNA upstream 134520 12147496 ~ 12153883 (-) True LOC113528185
XM_026916823.2 mRNA upstream 177096 12190072 ~ 12200474 (-) True slc5a11
XM_034310196.1 mRNA upstream 177096 12190072 ~ 12197857 (-) False slc5a11
XR_003402968.1 other downstream 208198 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 263020 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 397993 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 427443 11536560 ~ 11536678 (-) True LOC113528647
XR_003402978.2 other downstream 531493 11432510 ~ 11432628 (-) True LOC113528663
XR_003402971.1 other upstream 12526 12025502 ~ 12025572 (-) True LOC113528656
TU248755 other upstream 287029 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 320882 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 535853 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 535853 12548829 ~ 12559213 (-) False tom1

Expression Profile