RNA id: XM_026916025.2


Basic Information

Item Value
RNA id XM_026916025.2
length 4486
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113527879
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9158376 ~ 9166233 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCCGCGCGCGTCGAGTGAAATCGCACCTCCTTCTGTGCACGCGAGCGCTCCCCATCCCTCTCtgccgacacacacacacacacacacacagagcgcagTGAGGGTAGTGCTGACCGAGAAGCACAGTCTGTCCCACAGTCTGTTTCTAGCATATTCAAGCATCCCTGTGCCAAGTTCCTTATagtttccttttccttttattcCACCATGATAAGGCGCACTGGAATATTCTCCCACGCTTCGCACTAGAAAAGTTTTGTCAGACAACATATCACAGCCATAACACAGCACTGTAAActagtttaaaaacaaattggGCATTCTGCAAGATGGCTCTGAACACAGACACCAACGCACCAACTACTGACCTAAATGTAGGGCAGGAAGAAGAGCAACAAActgaacaacagcaacaaactGAACAACTGACCGATCAACAACCAGATGACGGGTCTGGCCAGACCCCCATATCCTCTCAGCCAGTGAAGACTGAGCACCAAGATCCACCCACTGATACAGAGTCCACTCCTGCCCCAGAAAGCTCAGTCCAGTTGAATGGAGTGGCCAAAGACCACCTGTCAGTCATCGATGAAAAGATGGAAACAAGTAATGGAGTCTGCCCTAAAGCTGTGGATGCTTCTCCTCCTACTTCTTCCCGTTCTTCTCCTCCTCGTCATCATCATGCTAAGGCTGGCCATGCTCATGCTAATGGCCATGCCCGCCACGGAAGCCGTTCAGGTTCAATGAGCCATGCTGGTTCTCCTCGGCCCTCGCTCAGCCGCCAGCCCAGTGCTCTCACCGAGAGTGCAGGAGATGGCACTAAGCCCAATGATTACCTTATCCTGGCCATACTTGCCTGCATCTGCCCAATGTGGCCTATCAACATCGTTGGCTTGACCTTCTCTGTTATGTCTCGGTACAGTCTGCAACAAGGGAACACTGATGGAGCACGGCGTCTTGGCCGCAACGCAAAGATCCTCTCAATCGTCTCTCTTGTGGGTGGAGTTGTCATCATTACTGCCGCCTTTGTCATCAACCCGGGATTGATAATAAAAAAGTCCTGAGGGTTGCCATGACAATCAGACCAAGGAGGAATTTCTGACCAACCAACTGATCCATGATGACCATCGTCCTCCTCTCACCCTGCATTTCCACAAATTACTGAAGCACCtcaagatttatttttcagttcttttctaCTCTGTGTCAAGTTCCTGAGACCAAACACCCTCTTTTCATCTGtagaaagaaaatcagcaaaatCAGGAGTGAAGACTTCCCCAGCATTTTGAATGGAGGTATAAGTGACTGAAGCCAGCTGAATCATAACATGCatcttttatgttttgtttttgtttgggttttttttttcagcaaaaagGACTAATTGCTTTTTAAATGATGTCAGCAAAGAGGCATTCAGTATGATCTCATTTCCTGTCTAAagtcctttgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagaaatagagaaagaataaaagagcAAGATGTTTGATGAAGGCACTTTGTGTagagaacatgtgaaagatGATCTGTTTCTCTGCTACCAAGGTTACACACTTTCTGAGTAATGGCATCAGATTCATAGTTAAAGAGAATAGCTAATATTAAGCCTAATGTAAATTAATGGGAGGAAAGGCAATTACTGAAATGATGAAGGAGAAACAGTGAAAAGGAAGCGAAATGAGAATCTGATGCATCCAGCAAGCAGACTCTCCATCCAGCATTCTCTCCTAGAAACGATTGAAATCTCAAAGGAGCAAGACAATAAAAGAAACTAGCATGCGCACTCCTACAGTGTGTCTCCTGCTCCGGTTTCCTCTTCTTGATATGTATTTATGTCCACAAACTAAAGTTTGGCACATTATCAGAGGTGGATTTGTGTGAAAGAAACAAATGCAGGTGAACACACATGAACAGATAGCACAGACGTGAGCTTCCTGACTGGCTGACGGTAACTAAAGCGCATTGATGGTGTGGAGTAGGGAGAAGGGAGGGGGGGAGCAGGGCTGAACTGGGCTGCAGTCCTTTGTTTCacacagatggagagatgagagagggagggaggatgGGAGGGAGGTGGCAAACTGCTGATGAAAAGATACTctagagatggagagatgcaAGGAATTGCAGTAGAGAAGGATGCAAACACGCCTTCTGATTGGTCCTGTATTGTgagcgcatgtgtgtgtgtgtgtgtgtgtatacaaggGAGGGGGTTATGCGGTATTCCCCCTGCACCCTTTCTCCCCTCTGCTTCCCTTCCAAGACTTCCCAGACCACCAGTGCAACCATGTGAAGAGGAATTATTGCTAAGTTAGCGTTATTGTCTTTTTCAGTTTGTATAACTGCACACAGCAGATCTTAATGTTTACAAGACCAGGATCAGCCTGCACAATCACATCCCATAAATGCAAAATCAACCCAGCTGAATCTATTCCCTTGACTGACTCGTTTTGTGTCACTCAGCAGTGTGATACCCGATTCACTTCTGTTTGGGTAGCTTTGCCAAAACAGAATCTGTGCCAAGTCTCTGAAAGGTAGCTTTTTAGCTTTTCTATTTTGGATCAGaagatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagaggtaagtGATGATACTCCTGAGTTAATCATAATATCCCAGTCCCCAAAAATGTGGTATTTCAACATTGCTTATCACTACGTATATATCTTATTATGTATGTGTCATGGGAGAGTCTAAATGTACTTCCTGGGTGAACTCTTTCTTGCTtaattgctgaaaaaaatattgtaaaatgctCATAGACCCCCTGTTTTACATGGTTGATGTTTACAGTGTAATGGCTTTTTGACGAAAGCCAAAAGGAAGTGATGAGTGTTTTTTGATCTTTTGTGAAGGTTTTCAGAAGGCAAGTCCTTCATTTTGTAGCACTTTGTAAATACAGGATATTAAAAACGAACCTCTGTTTACGACAAGATTTACAGCATTGTTAAGCACCATGACCACATGCTGGGTCCAGTGACATGCAGGCTGCAGAGCCTGTTGTGTATTTTAAAGCCGCACAAATGGGGTTttgtccactagagggcaagGTGGCACTAGAGTAAGCAGCTGGAAAATGAAAGTGTGCAAAGTCAAATATTCTGGACTTTTGTGTTTCAGAACCAGTGAACTGGGTCTAAGACTGGGCTTGAATGCAACTGGAGGTCAGTTGAGAGTTTATACATTAGCACACAATGTTCAGGGACCCTTTTTTGTTCTGCATTATTGGTGGACAAAATCTATAAACGTGCATGTTTAAATGTGGCGGTAttggaaatgaatgaattggCAGAAATTGTGTTGGACTGAAACTTCTGCTGCATTTTACAAAACAATGGCAACTTCTATTATGAGTTGAATTGTGCACCATTTTGTTCAGTTCTTTTGCTTCCCTCAAATATTAATAACCTGTAGCATGCCTATTTTTTAATCAGGATTAATCCAAAACATACTGCGCATTAATGTGAGAACCTTGGCATTGTTTCTGTTCTCTTGAAATGCTTTAACTGGCTGAAGATATTTACTCTGCCTGCACTGCTAGCTTTCCTAATGTATATActaatgtacatatttatatgtatatatttgtactgCTACCTTCTGCCTATGCGTTATTCTTTGATGAATATTAGATTATTAGTAATGCAATTTCTTGACTGTTATCACTACAGTAATTTCATGCATTCTATTGTTATACTATATTTATcgttatacatatttttatggTTATGTACTTCAGAATTGTTGCCTCTGAGTGGATTATATATATGCACCATAGCTTTGCAGTCAATTGTTTGGCTGTCAGGTTTTACTGGTACATTTCTGAGGTGTGAACTTTGACCTCACGTGTTTACACAGTTTATTACAGAATCCACATGCTGCTTAGTGACATTCAGAAGGAGGAATCATCTAATCTTTCAGTGACACCAGCAGAGTATCAGTCTCTGGGTTTCATTTGAGTTTCACCAGTTCTCCAAGTCCATTCATTCCTAGCTcactaaaatatgtatttttcaaGGACCATGTAAAAAGCACTCTATGCCAGTTCTTTTTGTCCTTCTTGTTCAGTGAATGTACTTTCCTTCACTGCATAAACTCACCCTTATTTTGGGTAAGCCACCAGTGCCAGAGGTTGATGCTTTTTTCTCTATGAAATTAATGTTTCTTGCATTATGACAAGCCCTATTGCTTCTATAATCCTGACTTTGTGCAGACTTGCCTGTGCATGCCTTAACGGATTGCTTTTAACCTACAATATGTGATGTACACAGTATGTAGAACAAGGCCATTGATAGAGCCCTATGTATTGATCTTGTTCTAATCCTACTAATAATGTTTCAGTGAGCATTGTGAATAAACACTTCCTCATTAGTGGCA

Function

GO: NA

KEGG:

id description
K23897 PRRT2; proline-rich transmembrane protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 34495 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 55250 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 94869 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 127398 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 133393 9024761 ~ 9024983 (-) True G208151
XR_004579419.1 lncRNA upstream 275753 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 275753 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 328390 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 563636 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 580263 9746496 ~ 9748039 (-) True G208473
XM_026916931.2 mRNA downstream 6368 9144574 ~ 9152008 (-) True zgc:66443
XM_034309667.1 mRNA downstream 15505 9112966 ~ 9142871 (-) False LOC113527952
XM_034309665.1 mRNA downstream 15505 9112966 ~ 9142871 (-) False LOC113527952
XM_026916153.2 mRNA downstream 15505 9121739 ~ 9142871 (-) True LOC113527952
XM_034309668.1 mRNA downstream 15505 9123652 ~ 9142871 (-) False LOC113527952
XM_026916769.2 mRNA upstream 2149 9168382 ~ 9184513 (-) True mvp
XM_026916047.2 mRNA upstream 30406 9196639 ~ 9203494 (-) False dnal4a
XM_034309663.1 mRNA upstream 30406 9196639 ~ 9203489 (-) False dnal4a
XM_026916049.2 mRNA upstream 30406 9196639 ~ 9203489 (-) False dnal4a
XM_026916052.2 mRNA upstream 30406 9196639 ~ 9203449 (-) False dnal4a
TU246334 other downstream 445058 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 873784 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 890738 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1727304 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 21287 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 30263 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 30263 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 243571 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 243571 9409804 ~ 9419584 (-) False prr15la

Expression Profile