RNA id: XM_026916026.2


Basic Information

Item Value
RNA id XM_026916026.2
length 1495
RNA type mRNA
GC content 0.46
exon number 8
gene id ankrd54
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11657529 ~ 11662120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCTTGAGCAATCGCCGTGTTTCTTACTGGGTTGAAGAGCTAACATGAAACAGGCGACATTTTggctctgtaacacactaacgACCGGTTGATTAACATATCTATTTTGAACCACAGTGGAATTGTAGCTGAGTTGTTTCTCTGACAACCGGAACAAGTAATGTAGCTCCTAAGCAGATTCTTAGGCACCgcagcagttttttttccaACTCCACTATCGAGCTAATAGGCTGTGTGCATATGTGAATGCGCTACTGTTAGTTTGCGTAATGCAGAGAAACAAACTTGTATGTGTTAAATGACTCGGTGAGTATGGAGGGGTCCGACGACGAGCGGTCCAGTTGTGAGGGCGAGTACATGCTGAGGAACTCGCCGCAGAAAGAAGTaaagggagaaaaaagggaggATGGGGCAGCCGTGGGAGCTGCTTCTTCGTTTGGCTTCTCGGGTATTGACACCTTGAGCGCCCTGAAGCTCCACCGCAGCAGCCATTCGGCGGAGAAAAGCCTCCGCTACCTGCACTCTTTATGGAGCCCGGGCGCGTTACTTCAGGCCGAACCGGCTGGAGGCAAAATGACGGTGAGCAGAACCAGAAGACTGGGGAGAGTCCGGAGAAACCTGGGACCTATAGGCAAAGACCTTTACGCTGTGAAGAGGCTCAGAGAAGCAGCCAATAGCAACGATATTGACACTGTTCGTAGGTTATTGCAGGATGGCATTGACCCATGCGCGGCAGATGACAAGGGAAGAACTGCTTTACATTTCTCCTCCTGCAATGGCAATGAGAGTATTGTTCAGCTGTTGCTAAGCCATGGTGCCGATCCAAACCAGCGAGACAGCCTTGGGAACACTCCTCTTCATCTTGCTGCCTGTACCAACCATGTGCCTGTCATCACTACTTTACTGAGAGGAGGTGCTCGTGTAGATGCATTGGACCGTGCAGGAAGAACCCCTCTGCATCTTGCACGCTCGAAGCTCAACATTTTACAGGAAGGAGAGTCCCGTAGCTTGGAAACCTTACGAGGAGAAGTCACTCAGATCATTCAGATGCTGCGTGAATACCTGAACGTGATGGGCCACAGTGAGGAGCGAGAGAAGCTGGAACATATTTCTACCCAACTACAACACACCCGCACTAAAGAACAGGTGGATGAGGTGACTGACTTACTGGCCAGCTTCACATCTCTAAGTATACAAATGCAGAATATGGGAGACAGGTAGAGAAGAATGGCCATGGAGGCTTACAGAAGGCTGGATGGGGAAAAAGTACctgagatatttatttacacatgacATATGttgtataattttaataatttggtCAGTTGTACAAAGTGTATGACTAAGTCAATGGCCTtcaaatgccttttttttaatatctttttattttgcgTTGTCTGTATATTTGTTCAGTCATTATTGTTCACTGTaaaccttttttgttttatgttgaaCATGTATcagacaatgacaataaaaaatgaTGTCCAAATA

Function

GO:

id name namespace
GO:0030496 midbody cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K21442 ANKRD54; ankyrin repeat domain-containing protein 54

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248037 lncRNA upstream 23048 11633912 ~ 11634481 (+) True G209392
TU248035 lncRNA upstream 39295 11618035 ~ 11618234 (+) True G209390
TU247909 lncRNA upstream 278729 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 675236 10971980 ~ 10982293 (+) False LOC117598771
XR_004579342.1 lncRNA upstream 675451 10971721 ~ 10982078 (+) False LOC117598771
TU248059 lncRNA downstream 46608 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 146141 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 357743 12019863 ~ 12021132 (+) True G209775
TU248507 lncRNA downstream 399449 12061569 ~ 12061782 (+) True G209798
TU248505 lncRNA downstream 423008 12085128 ~ 12086009 (+) False tbc1d16
XM_026916691.2 mRNA upstream 402 11648149 ~ 11657127 (+) True foxred2
XM_034310072.1 mRNA upstream 402 11648276 ~ 11657127 (+) False foxred2
XM_034310071.1 mRNA upstream 15472 11635325 ~ 11642057 (+) True mcm5
XM_026916066.2 mRNA upstream 23856 11626282 ~ 11633673 (+) True gcat
XM_026917186.2 mRNA upstream 56117 11578560 ~ 11601412 (+) True si:ch73-281f12.4
XM_026916497.2 mRNA downstream 101 11662221 ~ 11671601 (+) False hmgxb4a
XM_026916498.2 mRNA downstream 101 11662221 ~ 11671601 (+) False hmgxb4a
XM_026916499.2 mRNA downstream 101 11662221 ~ 11671601 (+) False hmgxb4a
XM_034310073.1 mRNA downstream 308 11662428 ~ 11671601 (+) True hmgxb4a
XM_026916500.2 mRNA downstream 9586 11671706 ~ 11677461 (+) True si:dkeyp-69e1.8
XR_004579334.1 other upstream 79706 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 120364 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1239648 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 496586 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1813708 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4151122 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4256097 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4478210 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile