RNA id: XM_026916035.2


Basic Information

Item Value
RNA id XM_026916035.2
length 3400
RNA type mRNA
GC content 0.42
exon number 4
gene id unm_sa1261
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11538334 ~ 11560829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGCAGTACAGTGGCTGCAAAGGAACAAAGGCAGATTGAGAACTGTCAGTGAACTTATTAACTGTGGTAACTGCCTCCTATCACTGGAAGAATGAGCACCTCCCCTAGTGGATCTCGTGCCTCCATCGACATCTTGGAGGAGCTGCAGCTTATTGCTGCCCAGAACCTGGAGAAGCTGGACATTAATAAGTACTATGAGGTTATTAGGGAGCTGGGCAAGGGCACCTATGGCAAGGTGGATCTGGTTGTCCACAAGATCAGAGGCACTAAGATGGCTCTGAAGTTCTTGCGGAAGAAAACCACTAAGCTGAAGAGCTTTCTGAGGGAGTATAGCATCTCACTCTATGTTTCCCCGTGCCCATACATCATCAGCATGTATGGCATCGCCTTTGAGACAGACGAGTATTACATCTTTGCTCAAGAGTATGCATTAGCTGGGGACCTCTTTGACATCATTCCTCCTCAGGTGGGGCTGCCAGAGAGTGTGGCGAAACGCTGTGTGCACCAGGTGGCCTTGGCACTGGACTACCTTCACTCTAAGAAGCTGGTGCATCGTGACATCAAGCCTGAGAACGTGCTCATCTTTGACCGGGAGTGCCGTAAGGTCAAGCTGTCAGACTTCGGCATGACGCGTCGAGCCGGTTCACCAGTAAAGCGCGTCAGCGGTACCATCCCTTACACGGCACCTGAGCTGTGTGAGCCAGGCCGCCATGATGGTTTCTGTGTGGACTACAGCACAGATGTGTGGGCCTTTGGAGTGCTCCTATTCTGTATGCTCACAGGCAACTTTCCATGGGAGAAGGCGCTACCATGCGATGCCTTTTATGAGGAGTTTGCACGCTGGCAGCAGCAGCCAAAGAGGCGGGCGGGTGCAGTGCCATCACAATGGCGCCGCTTTACCAACGAGGCGCTGCGCATGTTCCGTCACCTCCTGGCCATCGAGAAGGAGCAACGCTGCTCTGTCAACGAGGTGCTCACCTTCTTCTGCCACTGCTGGATGCTAGACACGGAAAATGGCAACACAGCTACCTCACCCAGTGGCACGGTGCTCAATGGGCACCTGGCTGAGCTCAGCTCTTCTTCCTCAGAGGAAGATGATCTGGTGGAGCGTCTGAAGCAGCAGAGCCTGTCACCTGTGTGTGCTGTGGCCAAAGCAGGCATTGTCATTGAGCCAGTGGCACCACCCTACTCCACCGTGTCTACCATCAACTCGCCTTCCTCTAATAACAGCTACGAGCGTGTCTCCCGTGACAGCAACGGTAATGGAGGTCGCATCCTTGTGACTACGCCCATCGAGATCTGTGTGTAGTGAGGCTCTAGAAGGTAACAGACTATACACATACTCAAAACACCGGGAACCAGTCGACAACAGTGAGGACCCATATCCTTAAACAAGGAGGAAATGCTCCCTCTCTCATGCTGAGTGTAGAACATGGTGAAAATGTTCTACGGAGGCAGACTTGTCAGTTGTTCCTAATGATGAGTGTCACTGAGGGAATACTACAAGTTGAAAACAGTCAAGTCATACTGATTGTGTATCTCAGCATTTCAACCATGTTAGTCCACATGTAATCAGTCCACCATTAGCAACAGTGCacacatgggaaaaaaaacatacaaacaaacaggcGTGAAATTACCTGTACCATCATATAGCaatatgttaaatgttttgcaaaaataaaaatcaacgTAACAACGGTCAAAGTTGCAATGTCTGAGACTAACTGCAAAAACatataatgtgaaaatgttcataatGTGATTTTTGGAAGTGATACTTATTTGTGCTTGAATGTCCATTTGGTTAGTGGGTAACTTCAataaaaagtagtttttttttaattatttattttggtctTGTACTTCTGatattttgctatttattttatactgtagCAGTATATAGTTAATATTGCCCAGTTGCCATTATGGTGTGttgcattgtttaaaaaaaaaaaaaatcaagtccCTCTAAACCAAATTGTTATCAGAACTAATTTGAACAGGACATGCATGCCATTTTCTCTGTGTTGTTTCTTAGTATGGTGCATTTTTGAGAGCTTCAATGGGTCTTCTCACAGTGAGCGAGGCCTGGATTGCTCGGATGATGTTACCAATGTGGTCGCAGTGCATATGGATGCCTGTCACTATTCTGAACACAGAGAAGGTTTGATTTGTGctaaacaaaacacagagcatGCCAGTGATTCAGATGCGGTGATACAGAATCATTTGTCCATGGCTTGAGAAAGAGGACACTACTGTAGGTGTCATTTGACAGTTTTAtaagtgcagatggacaatttTGAAAGAATTCTTCTGACTTGAAGGTGTTTTAAGAATTTCTCAGGTATATATGGCTATACCGTGTAATATCTCACAATAGCCGAGTTTAAGTCCAGTTGTttaaaggaaaggaaggacATTGTGAGTCAGTGCCACTGGAATGTGTGACAGAGAAACTGATAGCAGGCGAGACATGCTGCATTAAATGACAAACTCTGAATCTTGTTACAAAATATGGAACTTGATTTGATTGAGACTGTTATCACTTGCCAtatgtgattcattttttttccagatcttGTTATGAAAAATAATTGGTTGTTACATTCATTGCTTTGTTTCAGCTCTCACTCAAATTTTGAATGAAGTaggtttttaaaacaataaatgatcTAAACCAAAAACAACTTCATATGGGGTTCTCATTAAGATCTAACCCCACACGTCTGCTTAGTCATACCTTTGACACAGATTTTTATAGcatagtttttattattttgttcgTGTACTTGGgtgggatttttatttttttttaaataccaatTTTGATAGGCATGGTAGCAGAAGTGTTTTAAAGAAATTGTTCAGAAATTGGAGAAAGGAATAACTGATGTGGCATTTTTGAAAGGGTGTTTCTGAAATTGCATGGATATAAAACCTATGTAAACAGGTCTTTTTATCTGTGCTACCTTTTAGatatgtgaaattaaatgtgtCGTGATATTTTACAGTAGCACAAATTTGCATAAATTGATATCTTAAtggaattaaaaatgaaaaaggaaaaacaaatgtaGGGCTTCATTTATTCTCTCTGTGCTGTAGGCCTACATGCGTTCTAATGAGGCAGTTCAGAGCATTAATGCAGTCTGTCAGACAACCTTTTCTTGGATATGTTGAACTTTTGTTGAATTCCATAAATGCCTGTCAACaactgaagacagaaagacattttttttttttaaaaaagaaaccatgACCAGACATtgtcattcacaaacacacttttttcaAAATTGACTTGTGTGTTGATATTTGCATGCGTCGGTATTGTTCTGGAGAGATAAtgttgaaataaatacatatccTTGATGCAGAAGGCTGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247909 lncRNA upstream 159534 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 556041 10971980 ~ 10982293 (+) False LOC117598771
XR_004579343.1 lncRNA upstream 556244 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA upstream 556256 10971721 ~ 10982078 (+) False LOC117598771
TU247667 lncRNA upstream 590793 10943255 ~ 10947541 (+) True G209069
TU248035 lncRNA downstream 57206 11618035 ~ 11618234 (+) True G209390
TU248037 lncRNA downstream 73083 11633912 ~ 11634481 (+) True G209392
TU248059 lncRNA downstream 147899 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 247432 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 459034 12019863 ~ 12021132 (+) True G209775
XM_026916080.2 mRNA upstream 2642 11531521 ~ 11535692 (+) True atp5pd
XM_026916938.2 mRNA upstream 29545 11500895 ~ 11508789 (+) True ndel1b
XM_026916939.2 mRNA upstream 29545 11500903 ~ 11508789 (+) False ndel1b
XM_034309993.1 mRNA upstream 44452 11450572 ~ 11493882 (+) False si:ch211-114m9.1
XM_026917192.2 mRNA downstream 6290 11567119 ~ 11577823 (+) True luc7l3
XM_026917191.2 mRNA downstream 6291 11567120 ~ 11577823 (+) False luc7l3
XM_026917186.2 mRNA downstream 17731 11578560 ~ 11601412 (+) True si:ch73-281f12.4
XM_026916066.2 mRNA downstream 65453 11626282 ~ 11633673 (+) True gcat
XM_034310071.1 mRNA downstream 74496 11635325 ~ 11642057 (+) True mcm5
XR_003402977.1 other upstream 1169 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1120453 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 1120453 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 1120453 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 1558380 9944306 ~ 9979954 (+) False rapgefl1
XR_004579334.1 other downstream 6290 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 597877 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1914999 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4252413 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4357388 15918217 ~ 15968759 (+) True G211913

Expression Profile