RNA id: XM_034310099.1


Basic Information

Item Value
RNA id XM_034310099.1
length 1966
RNA type mRNA
GC content 0.42
exon number 11
gene id gdpd3a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6180799 ~ 6188261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTAACCACAGACGTACCTCCAGAGAGAGCATGACTGGAGAGGAGGAGAATTATTGCAACATTTAGGTTTTATGGTCTATGTAGAAGGAGtgactgtggttttttttcgCTTGTTCTGTCCGGTTTGACTAGTTCTGAGCTTAATCACCCTATCAATGCAGGAGGGTAACAAGAAGGAGGGGAGATATACAGGGGAAAAGGAAGGTGTACAGAAAGACAGCAAACAGGTCAGCAGTGAAAGAGAGTGAGGAAAGTCTGTGGGAACGGTGTCtaaaccatctctctctctctctctctctctctctctctctgccttctcCTCCCATAAGGATAAAGCAACAAGAGGACACACAAAGGATAAATCAGAATCAGCCTGTGGAAATTATGTCCAGTTTCATGTATTACCTGCTCCCAGCAGTAGGGGGGTACACCATAACATCCCTCTACTTGCTGAAGAATCCATACATCCTGCACAAGAAGAAGCAGACAGCCTTCCACTGCATGCACATCTCACACAGAGGAGGTTCTGGAGAGAGAATTGAAAGCACCATGGAGGCTTTCACACATGCAGCCGAGGTGGGCACAGAGATGCTCGAGCTGGACTGTCACCTTACTCGTGATGGTCACGTGATTGTATCACATGATGAGAACCTCCTGCGGCAGACAGGGCTAGACGCCAACATCTCCGATCTAAACTTAGAGGAGCTACCACTGTATCAGGAACAACTTGAGGTTACATTTTACACAGgtcaCTACAGCACTGGCTCAGACAGAAAGTTTGCACTGTTAGAAGACGTCTTCCGCAAGTTTCCTAGGATGCCGGTGAACATCGAGGTGAAAGAGAACAACAAAGAGCTGATTGAAAAAGTATCTGCTCTTGTGAAGAAGTATGACCGAGAGGACATCACAGTTTGGGCATCTGTGGAGTCACCTATCATGAAGGAATGTcgtaaagtgAATTCCACTATGCCTTACATGTTCACGTATATGCGTGGCCTACAGCTGCTCCTGCTTTACTACACAGGCCTTCTGCCCTTCGTTCCATTGGGAGAAAGCTTCCTGCAGTACTACCTGCCCCAAGTCATCAACACGACGTACATACCAGAGCCTGGCATTCTGAGGAACAGATTGGTGATCTCATTCATTCAAAAGCTGACTTTGAGGAAAGGCTTGTTTCAGCATCTTAAAGACCGAGGAATTCAGATCcatctgtttgtttgtaatgAAGAACGGGACATCGAGGCTGCTTTTGCAGCAGGAGCAACCGGAGTCATGACTGATTATCCCACTCTCTTAGCAGACTACATTAGGAGGCACAGACAGGCCACATGAATGACAAGTTGAATGTTAcactgtattataataataataataataataataataataataatagcagcagTGAGGATTCTATTAACTTAttgtaaacatttgttttacaaaaaatgataatgaataatatataatgttagaACTACAATATTGATTTGAATGGCCTGGTTAATATTATACATGAGCTGACTTCCCTGTTTCTGGATTGTACACAGTTTATaaattgttttggttttgctccAGATTGCAGATTTCATCACGTTTGTGAGAACATCGAGTTCTGGTGAATATTAGTGtccagtgaaataaaacaactcATAAGCCTGCTTGTTCATAAGAATAGTCTGACTTTCCAGGATTTCACAATTCTCTCAGGAATACATAGTTCAAGTCAGTGTCACATTTCATCACAGAGACAATAATAAACTCATAAAAAGGCACACTGTTGTGCAGAGAGGCACGCAATTGCGTCATACTTTTACAAGACTAAAACACTGGCTTGAACAACcacaaaaaggttttaaattgtaatttctTTTAATCAGGGGCATTGAACCTAATCGCATTAAATTACATCTGATGCATTTATGTAATAACTATcatcactgtaaaataaatagatttatacCACaa

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0007420 brain development biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244306 lncRNA upstream 188727 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 216718 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 236367 5940879 ~ 5944432 (+) True G206301
TU244235 lncRNA upstream 255614 5918445 ~ 5925185 (+) True G206289
TU244231 lncRNA upstream 282599 5897385 ~ 5898200 (+) False tmem98
TU244409 lncRNA downstream 64083 6252344 ~ 6253065 (+) False LOC117598831
TU244542 lncRNA downstream 295418 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 362630 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 501195 6689456 ~ 6737847 (+) False G206801
TU244904 lncRNA downstream 542424 6730685 ~ 6810353 (+) False G206835
XM_034309894.1 mRNA upstream 5648 6160334 ~ 6175151 (+) True mapk3
XM_026917045.2 mRNA upstream 33181 6138100 ~ 6147618 (+) True cln3
XM_034310028.1 mRNA upstream 46227 6130780 ~ 6134572 (+) False si:ch211-198p11.6
XM_034310027.1 mRNA upstream 46227 6130809 ~ 6134572 (+) False si:ch211-198p11.6
XM_026916485.2 mRNA upstream 51988 6119493 ~ 6128811 (+) True zgc:100868
XM_026917286.2 mRNA downstream 1830 6190091 ~ 6194481 (+) False ypel3
XM_026916099.2 mRNA downstream 9379 6197640 ~ 6204209 (+) True LOC113527922
XM_026916615.2 mRNA downstream 17279 6205540 ~ 6212540 (+) True LOC113528207
XM_034310261.1 mRNA downstream 27025 6215286 ~ 6222046 (+) True rabep2
XM_026916520.2 mRNA downstream 27026 6215287 ~ 6222046 (+) False rabep2
XR_004579365.1 other upstream 5433 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 46228 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other upstream 46228 6130783 ~ 6134571 (+) False si:ch211-198p11.6
TU244082 other upstream 519951 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 1089467 5091248 ~ 5091332 (+) True LOC113528649
TU244376 other downstream 1904 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 66207 6254468 ~ 6260857 (+) False LOC117598831
XR_003402939.2 other downstream 896180 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 919917 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 1084199 7272460 ~ 7272531 (+) True trnac-gca_18

Expression Profile