RNA id: XM_026916054.2


Basic Information

Item Value
RNA id XM_026916054.2
length 1045
RNA type mRNA
GC content 0.45
exon number 5
gene id pvalb6
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9247782 ~ 9285940 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTCTCTcgcactctctctccccttcatCTCACCTCCAACCAGTCAGTGCTCCCTCTCCTTTCTGctctctccccctgtctctttttcttcctctatatctctctctctctgtttctctctctccctctctctcccttcctttctctctgtctccctggtCGGTGTGCTCTGACTCCTGGTCACTCAGCTACTCTACTCAAGCCTGTCCAGCTGCTGTACTCAATCTAGGACCCAGTGTCAACACTCAACACCAGCTGCAAAAATGGCAATGAGTAGCATCCTGAACACTGATGACATTAAGAAGGCCCTGGATGCATTCAAAGCTGCTGACTCATTCGACCATAAGAAGTTCTTCGAGATGGTGGGGCTGAAGGGAAAATCGTCCGATGATGTGAAGAAGGCCTTCCATGTACTGGACGCTGACAACAGCGGCTTTATAGAGGAAGAGGAGCTAAAATTTGTGCTGAAGGGCTTCGCTACCAATGGAAGAGATCTGACTGATAAAGAAACCAAAGCCTTCTTAAAGGCAGCTGATAAAGATGGAGACGgcaagattggagtggaagagTTTGTTGCTCTTGTCCAAGAGTAAGCAACACTGTCCAGGCCATCCCATGCCCTAATGACTCCTGACACACActcccaatacacacacacacacacacacacacacacacacaccctgtacattTTCACTCACCTCCTACAATcatgctatttatttttttccttttttttatacaaatgtgtgtttgtgttagtgtacAGGTGAAGAGGTGTAAACCTTCATCTTGGAAGTATGTACAGTAGATACTTTAAGAGGAATAGCCCACTCCCTTCATCTGTATTATTCTGcattcctttctctctttcccttctcCCTTTATCATTTGATCAATTGTTCTTTCCTCCACTCCTTAGCATTGCTTTGCCCTTGTcctgtctccatctctccctctcttcagAGCTGTTGTGAAATACACCAAATGAAGCAGGTCaaactgtgaaagaaaaaaaataaaacaagacaatatGCCTCGAGG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 123901 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 144656 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 184275 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 216804 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 222799 9024761 ~ 9024983 (-) True G208151
XR_004579419.1 lncRNA upstream 156046 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 156046 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 208683 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 443929 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 460556 9746496 ~ 9748039 (-) True G208473
XM_034310188.1 mRNA downstream 16534 9208211 ~ 9231248 (-) True cbx6b
XM_026916047.2 mRNA downstream 44288 9196639 ~ 9203494 (-) False dnal4a
XM_034309663.1 mRNA downstream 44293 9196639 ~ 9203489 (-) False dnal4a
XM_026916049.2 mRNA downstream 44293 9196639 ~ 9203489 (-) False dnal4a
XM_026916052.2 mRNA downstream 44333 9196639 ~ 9203449 (-) False dnal4a
XM_026917139.2 mRNA upstream 35319 9321259 ~ 9335630 (-) False pdgfbb
XM_026917140.2 mRNA upstream 35319 9321259 ~ 9335630 (-) True pdgfbb
XM_026917141.2 mRNA upstream 35319 9321259 ~ 9330365 (-) False pdgfbb
XM_026917281.2 mRNA upstream 87212 9373152 ~ 9379596 (-) False tmem150b
XM_026917279.2 mRNA upstream 87212 9373152 ~ 9378249 (-) False tmem150b
TU246677 other downstream 44142 9196496 ~ 9203640 (-) False dnal4a
TU246678 other downstream 44142 9196496 ~ 9203640 (-) True dnal4a
trnav-cac_10 other downstream 60190 9187520 ~ 9187592 (-) True trnav-cac_10
TU246334 other downstream 534464 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 963190 8284474 ~ 8284592 (-) True LOC113528661
TU246802 other upstream 123864 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 123864 9409804 ~ 9419584 (-) False prr15la
TU246806 other upstream 123864 9409804 ~ 9419584 (-) False prr15la
TU246804 other upstream 127661 9413601 ~ 9419584 (-) True prr15la
XR_004579423.1 other upstream 180540 9466480 ~ 9474478 (-) False copz2

Expression Profile