RNA id: XM_026916064.2


Basic Information

Item Value
RNA id XM_026916064.2
length 2121
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113527900
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14432724 ~ 14442332 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGACTCCAAAGCGTCTAGACACAATCTGAACGTTGCTTCGTGATTACAGCTCATGCATGGCAAGACTGTTCTGAATTGTATCATCTGTTCAGTTCAGATTGTAAAGCTATaaatgtctttcaGGTTTACGTGACTTGGTACTGAAGATTTCAAAAACCACCATGGataaataccacagtgcaGAGTCTCAGATGACCACGGTTTTGCTGCTGTCTCTTGTGGTGGTGGTCGCAGCAGGAATATTCCAGCTGTACAGTGTGATACTGAAACTGCTGCACAAAACACCTGTGCAAAACAAAGTAGTGCTAATAACCGATTCATTGTCAGCCCTGGGGAATGAGTGTGCAAAACTCTTCCACAAGCGGGGAGCTCGGCTGATCCTTTGTGGGAAGAACTGGGAAAAGCTTGAAGCTCTTGCACAACAGCTGGTCAATGAATCAGATCCTATTTTAACATTCCCACCAAAGTTAATAGAGCTGGACTTCACAGACATGGAGACATTGCCAGATGTGATTTCAGATGTACTTGACTGTTATGGCTACCTGGACATGCTCATCATAAACAGCAGCATGAAAGTGAAGGCACCTGCACAGTCTCTGTCTCTGGAAATGGACAAGATGGTTATGGATGTCAACTACTTTGGACCAATCACACTGGTCAAAGGTGTTCTGCCCTCAATGATCTCCAGAAGGTCTGGCCACATTCTCCTGGTCAACAGCATTCAGGGAAAACTGGCCGTTCCCTTCCGAACAACTTATGCTGCCTCCAAACATGCGGTACAAGCCTTCTTCGACTGCTTAAGAGCTGAGGTGCAAGAGTCTGGCATCTCTGTTAGTACCATCAGTCATACCTTCATAAACGCTGCTCCAACAACCCAGCATACCACCACAAGCAATTCCATCCTGTCAGGTAAATCCACCTCACAATCCTCTcataaaccaaacacacacacggtccCTCTTGACTTTTGTCCAATTGTCTCCTTCTCATTGAAATCTGCAGTCTTAACAGGACAGAAATCTCATGGCATTTCACCAGAGAAGATGGCCAATGCAATACTGCAAGCATTGGGCAGTAAGAAGAAGGAAATCATCATGGCCCACTCCATCTCAAAAGCAGCTATCTACACCCGCTCTCTCTTTCCCAACCTCTTCTTCGCTGTAACGGCAGCAGGAGTACGGAATGCTGCAGGTGTGGAGCCAGTGCAGTGAAATGTGACATTATTTGAGTTGTATTCGAAAACAAACCTTTTCTGGATTTTTTGTTGACATGGTGGGAAAAATTAGCATACTCTTCACTCTGCAAAATGACAACATGTTACAAAGTGTTACAATATTTGTAGTAAAACAATTAGATTTatgtttctgaatgtgatatactgtaaatgtggcCTTTTTCTACACCTTCCTTCTAAGGACCATTCTTCAGATCTATCTCAATTTTTATGGACTTCTGCACATCTCTGGtagtttttttcttccagtgtTTGGTAGTCTTTGTATCTTCCATATTTGATCCATTTCTGAATCATGTTTTTCACTGTTGGTGATGATTGTGGCAATCTGACATATTTTTATTACCTTCATTACCTTCTCGATCTATGTGATAGTTGAGTATTTTGTAATTTACGCTTTAGATCTTGTAACAGCTGTTTTCTTAATGTCATTGACTCTTAACATAAGGGTTCATAGCAAACTGCTTGAGAGTTACAGCCTGTCGCATTACAACAAAGGTTAAATATGTGttaactgttttatttagaCACCTCAGTAAGgtcaatgtaaataaattaatccaGACACAAAGGGGATggaaacttttgcactcaaccaACGTAAGTTAAGCGTATTGTCTCAGGCAGCAGAAAATTTCATGCTGCTTCTACTTTTAGTGATGAATGATTTGTGAGCAATTCTTCATTTTGAAAATTACTATAAACGTTATAGGTATCATAGTAAGAATAATTTGACAGAGGCTTTGAGTGAATTTGCAAACAGTCACTTTTCATCTACACACTAAAACAAGCAAGTACATGTATTTATCAGGtcaccatatactgtatacatattgTTTCAGtaatatacagtgctgtgcaaaattcttaggcacatgcaagaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249994 lncRNA upstream 2243 14433827 ~ 14434055 (+) True G211032
TU249993 lncRNA upstream 3003 14432370 ~ 14433295 (+) True G211031
TU249968 lncRNA upstream 56401 14378543 ~ 14379897 (+) True G211006
TU249711 lncRNA upstream 446405 13987875 ~ 13989893 (+) True G210784
TU249744 lncRNA upstream 508471 13922914 ~ 13927827 (+) False LOC113528277
TU250028 lncRNA downstream 24106 14466438 ~ 14466674 (+) True G211058
TU250048 lncRNA downstream 39481 14481813 ~ 14482016 (+) True G211076
TU250078 lncRNA downstream 120188 14562520 ~ 14563021 (+) True G211101
TU250095 lncRNA downstream 162385 14604717 ~ 14692759 (+) True G211117
TU250097 lncRNA downstream 176897 14619229 ~ 14621407 (+) False socs3a
XM_034310176.1 mRNA upstream 59849 14375095 ~ 14376449 (+) True rasd4
XM_026916850.2 mRNA upstream 124747 14229822 ~ 14311551 (+) True LOC113528345
XM_026916216.2 mRNA upstream 313984 14117953 ~ 14122314 (+) True nptx1l
XM_026917057.2 mRNA upstream 475947 13945365 ~ 13960351 (+) True cdr2l
XM_026917160.2 mRNA upstream 533187 13893471 ~ 13903111 (+) True si:ch211-120g10.1
XM_026916065.2 mRNA downstream 1302 14443634 ~ 14447163 (+) True im:6904045
XM_026916586.2 mRNA downstream 19024 14461356 ~ 14463482 (+) True LOC113528183
XM_026916071.2 mRNA downstream 33914 14476246 ~ 14478966 (+) True LOC113527904
XM_026916787.2 mRNA downstream 49056 14491388 ~ 14499569 (+) True timp2b
XM_034309828.1 mRNA downstream 58976 14501308 ~ 14527529 (+) False usp36
XR_004579399.1 other upstream 943448 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 2247709 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 2858475 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 2899133 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4018417 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 1370910 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 1475885 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 1697998 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 2644959 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 3741687 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile