RNA id: XM_026916067.2


Basic Information

Item Value
RNA id XM_026916067.2
length 2413
RNA type mRNA
GC content 0.44
exon number 15
gene id baiap2l2a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9233003 ~ 9245784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGTGTCAGATAAGAGGACATTGTTTACTTGTTTGGTTTTCACAATAACTGAGCTGCAAGATGTCAGGGCTGAACAGTGACCAACTCCATCGCTCCACATTGGGAATATACATGACTCTCATGGACCAGTTCAACCCCAGCCTGCAGAGGCTAGTGGCACTAGGGAATAACTATATTCAGGCTTTCCAAGctCTAGCTGCAACCAGCGAAGCCTACTTTAGTGCTCTTGGTAAGATGGGTGAACAGGCCATGCAAACTATGTCATCCCATTTACTAGGTGACATACTAATAGAGATTTCTGAGAGTCAGAGAAGACTTACCAGTGAAGTGGCAGGGGTGtTTCGCTGGTTCCATAACGAAGTCCTCCAGGAAATGGTAAACAACAGCAGGCAGGATAAAGACTACATATTTGACAGTAAGAGGCGCTATGAGATGGAGGTGAGGAACCAGGCAATGGCCCTGGAAAGACAGCTGAAGAGAGGGGGTTCACATgaTGCTAATGAATATGTGCAGTTCCTGAGGGAAAGCCAGAGAGAGGCCCTGAAAGAACAAGAGAGAAGATTTCGCTTTCTGGCTGAGAAACACTGCGGACTCACTCAATCCTTCTTATATCTCATGACCAAGACAGGGAACACCCTGCAGCAGAGAGCAGAGGGTTGGAGAGAGCAGGTGAATCAGACAAGGGGGTCCCGTCCAGGCACTGCATCCAGACAAGAAGACAAGGCTGGTGATCGAAGTCAAGCCTGGGCAGAACAGCCTCTAGGCAGAGTGCCCTCTAGAGgGCCATCCCCCCAACCGACTCGATCCCGCTCCAGCTCAATTGGTGAATCCCGTGGATCAGGTGGCGGTAGGATGATGCGAGCGTTGGTGCCACACCCCCCCTCTTCTAATTCCACCCTCTTGCCATTCTCCAAAGGAGAAACCATTAGAGTACTTGTGCCAGAGCCCCGAAATGGCTGGCTGTACGGTTGTTCTGAGAGTTCAGCACGacaagGCTGGTTTCCAGCTGCATATGTTGGTCCAATGGAAGACACATATAGACTGCCTGACCTCAGCAGCGGCTTATTTAGAAGCAGTATGAGCAACCTTCTTGACCAATCATCTAGCAACAGAACAAAtgcacctccacctcctccaccaccaccacctccaagCAAATCGAGCAGCTCGCGCCCAGTCACACCCACTTCTTTTGAAAACAAAAGACAAGATAACTATGGCGCTCGACCAGAACTTTTCCCAAGAGGCACAAACCCTTTTGCAACGGTGAAGCTGAAACCCACCAAAACCAACGACAGATCAGCTCCACGTGTAGGCTAACATATTCAACCAGTGAGAGCTGAGAGACATCAAAACACAGCCCCATCAGAGTGCAGCACATCATAAATCAGCACTACGCATGCTGCAGACTGAGCAGCTGTAATTGACTGCTTCAGATGTTGCTTGCTCATATTCCAGCTGGAGAATGTCTACTGAGAGGAAAATGACATTGAAGGCTTTTGCTAGCTCAAGATATGAGCTGTAAATTCTTGCTGTActtagagagaaagaatgacagaatgaaaGCCGAGATGGGGCTTGGAGGCAATTGGGTAACCtggctttaatttttttatccatttttttctgtaaaaaataatttaattgatttgATTATTGCCTGGAATGTATATATGGtagcaaacaataaaacattttcataataCATCACTGGTTTTCCATAGGGACACTTTAGCCTGAGTCTATTTCCAGAGACCCATCCATGGCAGAGCAAAGGGATATTTCACTTACCACTTCGTACCCTTTTGGTTCATATACAATGTGTTTAGTAATGATGGTGAGGGTTACAGTATCTATGGCAGcaattcattcacagggacttgtatattGGATGATCTACATAAGATCAAgatcaataataaatagataaaaaaaaaaccatgctgttatttaacaaagaaaatcctgaaattgttgaaatggtaaaggtttctgtaaggagacttatggaaggagtctccagtgtcagtgcttagtaGCAGTGAGTATGTTTGCCActatgggagagtcttcagggcagagcaatttgtgttttcctgtaacatgaAAACCTGCGTTGTAACCATTGTTCTATTCTACAAATGTAAAAGACCGAAAGACGTGTGATTGATCATGAAGTgtgattcattaataaattaaaatttgtaattgttggcaaactgttgttcaaaaaaaaaaaagggaataaaacaccttaGGCCgtgttatgagaaaataatccaGTCATTTTTAATTCCTTTCTTGCTAGCtgttattttatgaattatgaatatgAGTCATTTTatgaattgctgtggtttatCTGTGTTATGAGTCCTTGACTTCCTTAATAAAATAgtcattttattatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246625 lncRNA upstream 63987 9168275 ~ 9169016 (+) True G208229
TU246583 lncRNA upstream 107213 9115188 ~ 9125790 (+) True G208197
TU246505 lncRNA upstream 185587 9045645 ~ 9047416 (+) True G208133
TU246502 lncRNA upstream 188881 9041794 ~ 9044122 (+) True G208132
TU246495 lncRNA upstream 201082 9031393 ~ 9031921 (+) True G208125
TU246759 lncRNA downstream 127466 9373250 ~ 9374453 (+) True G208336
TU246749 lncRNA downstream 129156 9374940 ~ 9375627 (+) True G208326
TU246822 lncRNA downstream 239914 9485698 ~ 9490734 (+) True G208378
TU246828 lncRNA downstream 249231 9495015 ~ 9498049 (+) True G208382
TU246850 lncRNA downstream 309828 9555612 ~ 9555814 (+) True G208403
XM_026916917.2 mRNA upstream 133762 9074969 ~ 9099241 (+) True doc2a
XM_026916138.2 mRNA upstream 169590 9061563 ~ 9063413 (+) True nupr1b
XM_026916782.2 mRNA upstream 211470 9009586 ~ 9021533 (+) True atxn2l
XM_034310081.1 mRNA upstream 211788 9009585 ~ 9021215 (+) False atxn2l
XM_026916784.2 mRNA upstream 211788 9010562 ~ 9021215 (+) False atxn2l
XM_026917276.2 mRNA downstream 54317 9300101 ~ 9312782 (+) False csf2rb
XM_026917277.2 mRNA downstream 55358 9301142 ~ 9312782 (+) True csf2rb
XM_034309941.1 mRNA downstream 144640 9390424 ~ 9400838 (+) False si:dkey-110g7.8
XM_026916101.2 mRNA downstream 147959 9393743 ~ 9400838 (+) True si:dkey-110g7.8
XM_026916102.2 mRNA downstream 147959 9393743 ~ 9400838 (+) False si:dkey-110g7.8
TU246534 other upstream 169688 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 330326 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1224736 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1379494 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1933319 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 698522 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1103618 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1126631 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 1167200 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 2291263 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile