RNA id: XM_026916081.2


Basic Information

Item Value
RNA id XM_026916081.2
length 4057
RNA type mRNA
GC content 0.48
exon number 17
gene id ccnf
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16737941 ~ 16752068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACAACTCAAGCTGTGTGCATGAAGTTAAACAGTCCAACACTTAACTCTTCTGTTAGCGCCCAGTCTCCAACAAGCAGCAcaaaattcattaaagaacgTAAAGTAAACTTTACTAATTCTGTAAATACTCACTTTGGGGAGTGTTGTCTGTGGCAGCGGATAGATCTTCTCTTGAAATGAAAGCGGGCGTGCTACACTGTGGATGCCATAAATGTTCCTCTGTGCCTGCGAGGAAGCGGGTCCGAAAGCAGGTCTCGTCTCTGGGCCTCCTGTCTCTACCTGAGGAGGTGCTGCTTTGTGTCCTCCAGTGTCTCTCAGCTGAAGACCTGCTCGCCGTCAGAGCTGTGCACTCTCATCTCCGTAATATCATCGACAACAACTCGAGTGTTTGGGCACGGGTCAGCTTCAAGGACCGCTGGCCAGCCCCGGACACTGTCTGGCTCTTTGAGAGGGCTGCAGAGAAAGGAAATTTTGAGGCTGCAGTAAAACTAGGAATTGCGTATTTGTACAATGAAGGACCGTCACTCAGCGATGAGGGCCGGGCCGATCTCTGTGGCAGGATGGCTGCAAAATTCTTCACCCTGGCCGAGCGTGTGCGCTCGCCGCTGGCCGATCCCTTCATCTGGCTCTTTATCCGGCCGCCATGGTCTCCCTCTGGAAGCTGCTGCAAGGCTGTGGTGTATGAGCATCTCAAAGCAGAGTGTGAGAGCAACTTGgagaggagaggagcgCTACTGCATTGCCTGGCTAGAGTCCTTGAGCTGTCTGATgaTGAGGAGACGCGCTCGGGAGCTCTTGCTGTTTTGGACGAGTCGTCGTGCTGCGGCAGCGTGCAGAGCTCGTACCTCCTGTGGGAGAAAAATCGCCACATGGCTatgaCCGACCCTGGCAGATATCTGCAGTGTGTGCGCGTTCTCCGGGATTATGCTGCTAAGGGCTGCTGGGaagctcagTTGTCTTTAGCAAAGTCATGTGCCAGCGGCAATCCTCTGGGTTTGGAGCCGCGGGCCTGTGCTGACCTGGTGGCtcaattctttctttcctgtccATCACCACCACGACGCTCTGACAGCCCACACAAAGAGGGCATCAATGACACCATGAGGTACATCCTGGTGGACTGGTTGGTGGAGGTAGCCACCATGAAGGATTTCTCCAGTCTGGCACTGCATGTGACTGTGGGCTGTGTGGACCGCTACCTGGCCCGACGCTCCGTGCCTAAGGCTAGGTTACAGCTTCTGGGTATTGCCTGCATGGTCATCTGCACACGgtatatcagtaaagaaatTCTGACCATTCGAGAGGCTGTGTGGCTCACTGATAACACGTATCAGTACGAGGACCTGGTCAGGATGATGGGGGAGGTCATCTCTGTGCTGGAGGGGAAGATCCGAACTCCCACTCTGCTGGACTACGGTGAGGTACTGCAGTCTCTACTGCCCATGCAGCGCCGCACTGCTCATCTCTTCAGCTACATCTGTGAGCTGTCTCTGCTCTTCTCCCCTCTCACGGCGCCTGGTCCTGCTCGCCTCGCCAGTGCCACCCTGCTGCTCACCCGAGCACTGCACAACTACACTCCTGTATGGCCGAGTCTGCTGGTGGAGAGCACAGGTTTTACTGAGCAAGACCTGGTGCCCTGTGCTTTGCTGATCTACATTAAGTGCTTCAGCCAGGATGTGCCAAAAGATTACAGACAAGTGTCCTTAACTGGTGTTAAGCAGAGATTTGAAAGTGACTTCTACCAACATATAAGCAAAGACACAGTAATGGACTTTAAGGAACTGTGCCAGGTGCTGGAGGTTCCAGAGGTGGAGCCCCAAATTGAGCATCCTAGTGCTAACAGTCAGTCAGCAGACATCCACACATTCCTGTCCTCTCCATCCAGCAACAGCAAGAGGAGGGAGGATAGCATGCATACCCATCGAGGCAGCTTTgtggccacacccacagctgaGCTGTCCAATCAAGAGGAAACCCTTGTGTGTGACATTCTAGACTGGAGCCTTGATGCTTCCTGCTCAGGCTATGAGGGAGATCaggagagtgatggagagaaagagtgtgaagTCTCTGTCTTCTCAGTCCAGCTACCTCTGTGTGTGCAGTCTGCTGATGTACGGCTGCACTGCGGTGCTCTTTCTAGCGATGAGGACATGGGTGAGCCTGCTGCCTCCTGCTCTTCCTTTTCCTCCAAACGCCCGCTCCGCATCAATCTCCACAGCTCTGGATACTCTTCTGTCCAGAGCAGCAGTCCTTCCACTGCCTCTTCTTCCTCCCAGGTGCCCTGCCATCTCTCCCCAGTCAGCCTGGCACCAGCATCAGTGCCCGCCTCACCCGGCTTCCGTCTGCTGGTGCCCATGCAGAGACCCTGTGGCTCCACCCACCGGCAGGTGAAGAGGAAGAACACGGCAGCCCACAGTGGCGGAGAGATGGAGCTGGAAAGGGGAAATGGTGAGATCTCTGCGGATGAACAGGCTTTCCTTAGCTTGTGACTGAACAGTTGGCTCCAGCAGCCATGTCTGAGGTTAAGGGTGCCACTGTAACCTCCGTGCCTCTGAGAAGCAATCAAATGGCAGCTTTTCAAATCCTGTACAACTTGTCCACTATGAGCTTTTAAGGAATCTTCAAAACCTACAATGCTAACAATCAATAAGAGTTCACTGGGGACCAGTTAGcattatgtaaataaaagttTACTACCTGGCCTAAGCAGCTTTCATTCATTGTTAGCTGTTTGTATACTTGGATGGAGTGTCCCATTAAGACAAAGGGATAGAGAGGAAGAACAACGCTGATGGTCCTGCTTGGGTCCTGTCTGTTTCaccttgtgttgtgttgaaTTACATGTAGAAGACTTTGGGAACACCTCCTCTACAGGGTCACTTGCCGATTCATTTCCCAACAATTAAACCACTGGAATTCTTGAAAAAGGTCTGCTTGTGaacctgtgtgtctctgtgagaCCTGAGCCAAATGAACAGACTATTACAACAACCTCACGTTTCAGCCACCAGAGAAAATCAAAGACTATCTCAGAATTTACATTCATATggttacatttatatatatatttttttactggACAGAAAGACTTTAAATATCCAGGTACTGAGAGCTGTCAAAATACAACTGTTTCACTGAACTCTCTTCAGGGCACTGACGTATTTGTTTCTTTGGACTGCTGTTATGTGGAAGAGTAAATTATACTTTACatgtttttgtatgtatatgtgctATGTGCCTTTTCCATCATTCTAATGATTTGTGTCTTGTGCCATGTTCTGATGCCAAAGGTGTTATTATTTTCAAGTGTGGTCAAGTTATTATACTTGTACTGTAACATttcatacagcatacatactgCAAACGGTGCTGAATGTGATAGCATTATTTCACCTGTGATAAGTTTTTAACATTATGGGATAACACAGAAACTGTGTTGCAACAGTTTTAATGCACAATATCGGACATGTCGTTTCTTCATAACCTCAAATGAAGCaaagcactttttattttacaacaCTGGACAAGCAGTGTTCCTAAACAGCTGTGTATGTCTTTAGTGAAAAATCAATTACATGTATGTGTTATTCAGTGCTCTACAATAGAAATGTTCCTGCATTTCCAAAACATCACAACCCATGAAATGATTCTTAATGCATCTTTTCAGTACTGTAACttcattagatttttttttgtaactgtaactgaTTTTCATACCTATGTATATGTATGAAGCTGTGAAAAACCACTACTTGAAACCTATAGATCCATAGATGTTTGAGAAGTGTtttcaaaaacaataaaataatgctgcagtaagacttttttccccatctgaTTTCAGTAGAAAATATTTCCTGCAGACTGAATAGCAATAAGCCACATTTATATGTAGTTTCATATCTGATTAAAGGATATGAAAATCAGGTTAGATtgtacatgctttttttttccattttgtgcaCAGCACTTCTCAAGAATTTGCATTAAGAACAACGTGGACAAAACCAGCAGGAAGGCAGGTCAAAGGAAGGTCACAGACTGTATATTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10289 CCNF, FBXO1; F-box protein 1 (cyclin F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251546 lncRNA downstream 47604 16681184 ~ 16690337 (-) True G212395
TU251473 lncRNA downstream 164374 16573120 ~ 16573567 (-) False LOC113528039
TU251459 lncRNA downstream 240709 16478891 ~ 16497232 (-) True G212319
XR_003402922.2 lncRNA downstream 282094 16453560 ~ 16455847 (-) True LOC113528275
TU251176 lncRNA downstream 584371 16151738 ~ 16153570 (-) False LOC113528178
TU251514 lncRNA upstream 9164 16761232 ~ 16764671 (-) True LOC113527915
TU251619 lncRNA upstream 79900 16831968 ~ 16832219 (-) True G212463
TU251855 lncRNA upstream 426460 17178528 ~ 17179748 (-) True G212626
TU251866 lncRNA upstream 532432 17284500 ~ 17284707 (-) True G212637
TU251872 lncRNA upstream 540292 17292360 ~ 17292723 (-) True G212643
XM_026916431.2 mRNA downstream 1184 16691510 ~ 16736757 (-) True abca3b
XM_034310191.1 mRNA downstream 49342 16671145 ~ 16688599 (-) True LOC117595684
XM_034309987.1 mRNA downstream 60107 16671145 ~ 16677834 (-) True LOC113528100
XM_026916293.2 mRNA downstream 103204 16615091 ~ 16634737 (-) True LOC113528041
XM_026916292.2 mRNA downstream 139253 16572545 ~ 16598688 (-) True LOC113528039
XM_026916082.2 mRNA upstream 10358 16762426 ~ 16765341 (-) False LOC113527915
XM_034310079.1 mRNA upstream 18230 16770298 ~ 16779653 (-) True LOC113527928
XM_026916255.2 mRNA upstream 68172 16820240 ~ 16829084 (-) True dnaja3a
XM_026917290.2 mRNA upstream 157845 16909913 ~ 16931628 (-) True vasnb
XM_026917289.2 mRNA upstream 222653 16974721 ~ 17038944 (-) True glis2b
XR_003402969.1 other downstream 1266029 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 2047809 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 2216966 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 2247166 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2708300 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 540783 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 540783 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 540783 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 540783 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 540783 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile