RNA id: XM_034309827.1


Basic Information

Item Value
RNA id XM_034309827.1
length 5121
RNA type mRNA
GC content 0.49
exon number 23
gene id usp36
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14501308 ~ 14527529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCCACGCCCTCCGGTAATGCAGcacgggagagagagaatggaacaAAATGAAGGACTTCGCGGCATCTGAAGCTCTTCAGTAGAGAACTAGATTACCGCGTCCTGACAGTTCGTGTACGGAGGGCGGTGATGGTGCTGCAGCAGTGTGAAGCGCAGTGTTAGTCCTGTAGCAGTGAACAGTGGAGCAGGAAGTCTGCTCATTAGCAGCAGCAGTGAACTTCTACAGTGTCACCTTGTGTCTGTGCAGCAGTGAGTTTACCTAACCGTAAAGGTACAGTCAGACTTTATGCCTGCTAGCGGCACTCCAGTTACATCACCCTTTCTAAAGCATGTCTAAagaacagcaaaacaaaaagTGATGCGCAATGCCCATAGTGGACAAGCTGAAGGAGGCCCTGAAGCCGGGCCGAAAGGACTCTACCGATGAGGGAGACCTAAATAAGCTGCTCTCGTCCTCGGCCAAGAAGGTGCTGCTGCAGAAGATCGAGTTCGAGCCGGCTACCAAAGGCTTCAGCTACCAGCTGGAGACACTCAAGACCAAGTATGTGATCCTGAACCCCAAGACCGATGGTGTGGTGCAGAGAGCGGCCGAGCCCACGCCAATCAAGAGGCAAGGCTCTGAAGGCCTCAGTGGAGGTCAGGGTGATGGCATCCCAGCACCTCAGAAGCTGCTCTTTCCAGGGAACAAACTCTCCATGAAGTGGGAGCGAGTGTACCGGGTGGGAGCGGGCCTCCACAACCTGGGCAACACGTGCTTCCTGAACTCCACCGTGCAGTGTCTCACATACACGCCGCCGCTCGCCAACTACCTGCTGTCCAAGGAGCACAGCCGCTCCTGTCACCAGACAGGATTCTGTATGATCTGCATCATGCAGAACCATATCATCCAAGCCTTCGCCAACACCGGCAATGCCATCAAGCCTGTGTCATTTATCCGTGATTTGAAAAAAATTGCCCGCCACTTCCGGTTTGGCAGCCAGGAGGACGCCCATGAGTTTTTGCGCTACACCATCGACGCCATGCAGAAAGCCTGTCTTAATGGTTACCCAAAGTTGGACAGGCAGACGCAGGCCACCACGCTGGTTCACCAGATCTTTGGGGGTTACCTGAGGTCGAGAGtCAAGTGTTCTATTTGTAAAAGTGTGTCAGATACATACGACCCCTACCTGGACATAGCTGTTGAGATTCGGCAAGCAGCCAATATCGTTCGTGCCCTGGAGCTGTTTGTCAAGCCGGATGTTTTGAGCGGCGAGAATGCCTACATGTGTGCCAAGTGTAAGAAGAAAGTGCCGGCGACAAAACGATTCACAGTTCATCGGACGTCAAACGTGCTCACGCTTTCCCTTAAACGCTTTGCCAACTTCAGCGGAGGAAAGATTACCAAGGATGTTGGCTACCCGGAGTTCCTGAACATTCGTCCATACATGTCTCAAAACTCAGGAGACCCAGTGATGTATGGCCTTTATGCAGTCCTGGTGCACTCTGGGTACAGCTGTCATGCTGGTCACTACTACTGTTATGTAAAGGCCAGCAACGGGCAGTGGTACCAGATGAACGATTCGATGGTACATTCCAGTAACATCAAGGTCGTGCTCAATCAGCAGGCTTACGTCCTCTTTTACCTGAGGATTCCTGAAAAGAGGAACACAGACAGTTCAAGTGTAAAGCAGAACTTGGTGCATTCTGGAAGGAGTAACATGACCCCTGAGCAGCTGAAGAAAATTCCACTCAACGGCCCTTTGTCCTCTCCGCAGATCACCAAGaagGTGGACACCGCTCAGCTGAGGAAGATCCAGTCTGTGGACGGAGGGCTGGGCGTGCCAGTGGCCCGCAACGGCTCAGGCATCCAATCGCCCAAACTAGCTAACGGTACACCAAGGGTGCCAGGGGGCCCAACGCTCATCGAGGAGCCCATCAAGAAGCTGAAGAAGCCTCCTGCTCAGCCTCAGAACCGCACCAACATTCCTGCCTCCTCCAACGGCGTCGCTAAGTCTGAGCAGGACAAGGGGAGCAGCGGCGAGGGGCGGAGCCTGGCAGTGTCTACCTCACTCAAGTCCCTTGCATCAGAGTCCTCGTCAGCGGACACCTCATCTGAGTCCAAGGAATCGATTGGCACCAGGAGTGCTCCCGTGGGAGACGTGGCTACTCCTGCCAAGAGCATCGTAAACAGAACCTCCTCTCCGGCTAAAAGCGCCGAGCGACTTGCTGCTGAGGATCAGAAGTCGGCCAAGCTGAAACCTCCCGCCCTCAACAACATTGCATCCGAGCAAACCAGCACCATGTCGCCCCCTCCTGCCAAGAGACTGGCACTGTCTGCCAAGAAGGCCAGTCCCAGTCCCAGCCGGAGCccgaacagcagcagcagcaacagcagccgCAGCACTGAGGCTCCGTCCTCTTCATTGCATCATCAGTCCCGTGACCCTACGCATTCAGCTCTACTCCACCCTCTGACCCCCACCTCACCTTCCCAAAACCACAGGATTCCATTCCACTCTGCCAAGCAGCCTCAGCATGTACCTCATCTCTTTAAAAATGCAAGCCTGTTTAAGGagccctcctcctcctcctcctcctcctcctcctcctcctcctcctccttgaTGAATCCCACACTTTCTTCACCAGTCAGCAGGCTTCTCCCCTGCCCTGCCAGCAACTGCGGACCAATCCAGAGCCAGAAAACCACAGAATCAGCTCCAGCGTTTGCCGATGGACTCACCAGTCCAAccttaaagaagaagaagaagaagaagaagaaaaagaagcgaCGCCATTCTGAAATGGAAAACCCCGCTGCTGAGCTTCCTGCCAAAACTGAGCAGGACATGCCAGAGCTCACAGCTGAAACGAGAAAGGTAAAAAAGCGCAAGAAAAGGAAGCGAGAGGAGGAGCCAAACAGCATGAAGGTTCAGACAGAAGGCGTGCAATCCCATCTGGAGCCATCAGGTCAGGAAGAAGACTGGTGCCTCGGAGAGACGTGGAGAATAAACCCAGATGAAAGTTCAGAAAGGCCAAAACAGCAAAAGCCCACAGAGCCCAAACCGTCTCAGACCCAAGAACAAATTCAGCCATTGTTGTGTGAGACTCCACAGAACCATCATGACTCcactattaaaaagaaaaagaaaaagcacaaagagaAACTGGATGAGAACATCATCAAGCATGAGTCTTCTGAAAGAAAGACCGAGATGAAGCATATAGACACAGAGTCACTGGATTTAAGTGTCTCAAAGAAAAAAgccaagaagaggaaaagagaagcgCACCAGAGAGAGGCTGAGGATGCTCATGGGGACAATGCTGGAGGCGAGCCACTTAGTCAGACCAACCATGTGGTGTTGGAGAAGACCTGCAAACCCAGCACAGCTGCAGTGGTGGTCTGGGACAGCCAGGTTCAGGACGGTTATAAGCGCAGTAGAGCCGCTGCTGATTCAGGGCAGGCGTCTGGGAAAGAGTCTCGTCCTGCTGCTGCAGCCTGGGACGGCAAGAAGAGCTCTAGTGTAGTCGAGGAACTGCTTAAGAACGCCTCCGATAAAGCATACGGAACTCCAGTCCTGAGTTGGGATGGAGAGCGCTCTGCCATCAGTAGAGATGCCATGCAGGACGCATGTGATGCCAAACACGACACCGTAATCGACGAATGGGATGAAGAGTTTGACAGCGGAAAGGTAAAGAAGGTAAAGAAgtttaagaaagaaaggagaagaagtTTTAACGTCTTCCAGAAGATCCAGGATCGGCGCAACATGTGGTCTGTCACACCAGGAGGAAGGAGGAACAGTTGGAGCCATCGCTACTGACATGAAGGATTCGAGATGGGGATCCTGTTCACACACCCTGGCTCAGCTGCCTTATTGGAGGAGAAGCTGCGTGATCTCTCTGAGAATGGTCCAGAAAAGCGAGAGGCTCGTGTGGGAAGTAAATAAAGCGATGAGACCAAAGCCATCTGCAGGGGCTGACGTCCAGTATTTGGAGTCTGAATAAATTGGGCCTGGGTTTGAGCACACCAACGTATCATGGCGTCAGGTTCAAACCACCATAATAAACAATTTTAGCCACATATAACTTGAGTCCGTGGTGaaatactgtactgtatctTGCTATATCAGGAAAGGAGGCAAATATTCCCTGAAAACTGATAAAGTGATAGGCAATGGTGCTGTTATTATTGGGTTATTGATACATTGGGCCTACACTACTGCCTAGACTGTTgacaagaaaaacattttctcagaatgaatttttgtgcttttttttgtgttttttcccccccccCTCTtcttaaagatattttatttcactttatcaCATTTGATATATAATATTATCCCAATGGCCAGATGAGTAATCTGCTACATATTAGCTATGTAAGGCCAGCAGTCttgctcatttttaattttttttatgattattattattattatatgagcCTCATTGAATCCTTCCTGAAGCCTCCATGTTGTCGGCTTTTCACATTGAATGctgttgaagaaaaatgtgGTTCCCTGTTCTTTTTGTATTAACCTAATCTCTCTTCTATGTATTACCTAATATCCAAAAATTACAAGCTTGACGCGCCTATAACGTTTATCCCTTAGATGGGATGAATAATCTGTCCATCTGTAACATGTCTGAAGGCCAGGCTGCttcaatataaaaacatatccaTCCATTTCAGCGCTGGAGAGGCTGCATCGGCAGTGCTCCATCCCATAGAAATCCGCAGGGAAGGTTCTAGTGtgtatttcacattttacatgCCAATGCCACTGTTTCTACTCTCTATGCAAGTCAGACAGGTCTTAAAAAAGTGTTGTCTCTGTTCCTATCCTACAGTGCAAACATATCCTCTTCATCCCCCATTTTCACTGATCATTGATGATCCAGAGTTGAAACTTTTCTCTGGAATTGTACTATAATGCTTTAgaacaaaagatttattttactcCAGAGACCTAGCCACAGACTAATAGTGAGTAAGATGTGAAGCTTTCTGGAATAGAACATTGTACAGTCCCAATTGTGCTCTGTGTGACTTCCTTAAACATCCTTGTAGTCAAGAGTTAATTCCCCCAGATACTTCCATTTTAGAAAAAAGTTGccttgaattaat

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250048 lncRNA upstream 19308 14481813 ~ 14482016 (+) True G211076
TU250028 lncRNA upstream 34650 14466438 ~ 14466674 (+) True G211058
TU249994 lncRNA upstream 67269 14433827 ~ 14434055 (+) True G211032
TU249993 lncRNA upstream 68029 14432370 ~ 14433295 (+) True G211031
TU249968 lncRNA upstream 121427 14378543 ~ 14379897 (+) True G211006
TU250078 lncRNA downstream 34991 14562520 ~ 14563021 (+) True G211101
TU250095 lncRNA downstream 77188 14604717 ~ 14692759 (+) True G211117
TU250097 lncRNA downstream 91700 14619229 ~ 14621407 (+) False socs3a
XR_003402940.2 lncRNA downstream 116187 14643716 ~ 14644243 (+) True LOC113528421
TU250211 lncRNA downstream 187142 14714671 ~ 14714875 (+) True G211208
XM_026916787.2 mRNA upstream 1755 14491388 ~ 14499569 (+) True timp2b
XM_026916071.2 mRNA upstream 22358 14476246 ~ 14478966 (+) True LOC113527904
XM_026916586.2 mRNA upstream 37842 14461356 ~ 14463482 (+) True LOC113528183
XM_026916065.2 mRNA upstream 54161 14443634 ~ 14447163 (+) True im:6904045
XM_034310044.1 mRNA upstream 58998 14436565 ~ 14442326 (+) False LOC113527900
XM_026917131.2 mRNA downstream 7044 14534573 ~ 14601007 (+) False cyth1a
XM_026917129.2 mRNA downstream 16883 14544412 ~ 14601007 (+) True cyth1a
XM_026917130.2 mRNA downstream 30783 14558312 ~ 14601007 (+) False cyth1a
XM_026917132.2 mRNA downstream 43148 14570677 ~ 14601007 (+) False cyth1a
XM_026916947.2 mRNA downstream 91675 14619204 ~ 14621788 (+) True socs3a
XR_004579399.1 other upstream 1008474 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 2312735 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 2923501 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 2964159 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4083443 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 1285713 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 1390688 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 1612801 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 2559762 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 3656490 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile