RNA id: XM_026916109.2


Basic Information

Item Value
RNA id XM_026916109.2
length 5433
RNA type mRNA
GC content 0.48
exon number 8
gene id gpatch8
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5015567 ~ 5048818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGGGAATCACTTTGACCAGTATGACGAGGGCCAGTTGGAGCTGGAACAGGCCTCCCTGGACAAGCCCATAGAATCGGCCAGGGTTTAAAAGCCAGGATAACATTGGTCACCGGCTACTTCAGAAACATGGCTGGAAGCTGGGACAAGGCCTTGGCAAAACGATGCAGGGACGCACTGACCCTGTACCCATCATCGTCAAATATGATGTCATGGGGATGGGACGCATGGAAATGGAGCTGGACTATGCCGAGGATGCGACAGAGAAGCGGCGTGTATTGGAGGTGGAGAAAGAGGACACGGAGGAGTTGCGGCAAAAATACAAGGATtatgcagagaaagagaaagccaTTGCCAAGGCGTTGGAAGACCTGAGAGCTAACTTTTATTGTGAGCTATGTGATAAGCAGTATCAGAAACACCAGGAGTTTGACAATCACATCAACTCTTATGACCATGCACACAAACAGaggCTGAAAGAGCTGAAGCAGAGGGAATTTGCCCGGAATGTGTCTTCACGTTCCCGCAAGGATGGAAGAAAGCAGGAGAAGATGCTGCGGCGTATACACGAGCTGGCAGAGCAGAGGAAGCAGCAGGACTGTGTTCCTGGTAGCGGACCAATGTTCAAGCAAACCACAGTGGCAGTAGATGGAGAAGAGGGTGGCTTCTCAAGCATTGATGGTGTTCCTATGACCCCAGATGGTGTGACGGAGGAATCTTCTGGAGAGGATAAGGGAAATTCTGGTGGTTTTGGTCAAAGCTCCCCAAAACCAGGACCAACTATCAGTTTCTCCCTTCGCAAGAACACTTCCTCTCCCACACCAAGCGGAGGATCCCACACTCCCAAAGTTAGCGTGTCCTTCTCCTTTGCTAAGAAAGCACCTGTTAAACTAGAGACAGCTGCTGCTGTGTTTGCAGACCATGGAGAGGAAGCAATGGAAGGAGAAGAGAGCCAGGAAGAAGCAGTTGAGAAGATGGCAAGTGAGGAAGGAGGTACAGCATCCAGCACTGACAGCCCACAGAGTGCATCAGGTGGCATGGGTGTAGGGGATGAGCAGCCACAGTCTGATGATGGCGGAACCCTGGCCTCCACCCTTAACAagctgaagatgatgatgaagaaggaGGAAGGTTACTCTGGGCAGGAGCCgcaatattatcattatatgcCTCCTGCACACTGTCGGGTAAAGCCTCATTTTCAGTTTCTGCTCTTCATGAAGGCCTCTGACCAGTGTGGTAGTcgggaggaagaagaggatggGGAGGAAGAACAGAAGGCAGTACAAGCGGAAGGAGATGAGGCACAGAAAGAATCTAAAGACAATGATTGCAAATCAGAGAAGGACACTATAAAAGAGCCTGTAAAGGAACTGAGTACAAATTCTACTTCATCACCCaaagtaaaaacagaaatatcagaTAATACTCCAGGAGTAGTGAGCAATGCAGATTCCTCAAGCACTGTTTCCCAATCAACTGAAGCTAAGCAAGGGTCATCTGAACCTTCATCTGAAGACACTGGCCCTCGCATGCCAACAGGAcccttttttcctgttttgagTAAGGATGAGAGCACTACCTTACAGTGGCCCTCTGAACTCCTGGAGTTCACTAAGGCCCAGCCTTCGCTATCCTACAGTTGCAACCctctttattttgattttaagcTGTCTCGGAATAAAGGCAACAGAGGGGGTAGGGCAAACAAAGCTGCTAAACCTGCTAATACTGATGGTGGAGAGGGATCCAAGCCAGAAGATACCACTAGCACTGCAGCCACAAGTAGAGAAACTAGCACAGCACCACCAACCCCAGGTGTCAACACTGACAAAAAAGATGAATCTTCCTTGAAAGAAAAGACTGCAGAGGAtgagaaaaaagacaagaagcTAGAAAACCCTGAAGATGGAGTTGGAGGAtccaagaaaaagaagaagaagaagaaacataaGAAGTCAAGCAAGAGAGCCAAacgaaaagaaaaagagaaagcgGAGGgggagatggagacagagacacCGGGGGAGAagaccaaaaagaaaaagaagcacaaacgaaagaaaaacaaaaataaagtacGTGCCGAGGAAGATGAGAAAGCAGGAGAAAGTAAAGAACAGAAAGATACAGATGGCAAAGCTGGACCCAGTTCCTCTGCACAGCCTACAGGAGGGACTTTGATTTCAGATGGAGGAAAGAGAAAACGGCTCCATAAAGAAGTATCACAAAGGGCAGTCCCTCATGAGGGCAGTACAGGAAAGCCCAActcttcagaagagcacagtgGTACAAAACGCCCCAAACCTGACCCAAGCACATCAGTGGCGTCCTGCTCTGCTTCTGCCCAGAAGAGTCCTGTGGGCGGTCGACCGCCAACGAGTGAAAGTGACGAAGATGGAGGCTCAGCATCTCAGCGCTCACGCCGTCCTCACCGTCACACTACCCCTCCCCGTGAACGGCGTCACCACAGCGAGGACTCTCGACAGTCAGGTCGCTCACATAGTCGTTCCTCTCGCAGAGGAGATCGTAACCATAGGCGTAATAGAGGTAAAACATCACGTAGTCGGTCATATTCAAGTAGCTCTGAGCGTTCCTCTGCAGGAAGCAGTGCTTATAGTCGGCGCAGCCACAGCTACTCAGACAGCTATAGTGACTATAGTGGAGAACATCACCACAGGACAAAAAGATGGTCTTCAGACTCTGAATATGAGAGGAGAGGTGGTGGACGTTCACACAGACGGCgttactcctcctcctcttctgaaGACGACTCTCGCTCACGCTCGCGCTCTCATAGCCGCAGAAAGCACCATAGACGGAGGCGTCATCGCAGCAGCAGCCGCAGTTACAGTCgtagcagcaggagcagcagtgcTCGCTCGTACCGACACAGCAGCTACAGCCGCAGTCGCAGCTCTGCCAGTCACTCGTCCAGCTCCACCAAAGGCTCACCACACCGGCACAGTCACAACCGACGGGCTGACAGCTCATCCCGTCGACGTGATTTTAATCGCTCTCGTATCTACCGATCACAGTCTCCAAGGTCTTCCTCATCCCGTGCACAGCCACGAACCAGCAACTCAACACAAGCAACTAAAGGAAGTGGGGGCGGAGGAGGCGCTTCAGAGCATCGGAACTCACTCACAGCACGACAGCTTCTCGAAAAAGTCCAGTCTCGCAAGGGCGGTGAAGATTCTGGTACAGGAAGCAAACCAGGCACCAAAATTAAGGACCCTCCACAGGGATACTTTGGGCCCAAGCTCCCCCCTGTACTTGGAAACAAGAACATGTTGCCCCTATTTGGTAAGCTGCAAGCAGGGAAGAAACCGCCATTACTTTCTGTAATGCGAACGGATGATGGGGAAAAGTCAGCGCTTGGAAAGGGTTCTGATACAAGTAATGAGGTGATTCTTGTGGAGCCCATTCGTGAGTTTCCTCCtccacccccaccaccacctccaccagtccaacagcagcagcagcagcagcagcaggtggATGAGCCCATCTCAAATACTGTGGTCTCAGATGAGGCCAGAAACCAAGCCTCAGAACCCCAAGTGCTCCATGAATCACGGTCAATGTTTGAGCAGGATTCAGCTAAGGTTATGCCTGCATACCAAGGTGAGCCTGGACAAGACCCCAACAACCcaatgatggatggatgtattcTGGGATCTGACATGGGCCAGCAAACAGCCATGCACGCCTATCAAGGCTACCCAGTGCCCAATATGGAGGAGGAGGACATAGGCATGGAGGCTGAAGAGGATGGCTTGGCACCACTGGAGagccagccaatcacatttACCCCAGAGGAGATGGAGAAATACAGTAAGCTACAACAAGCAGCACAGCAACACATCCAGCAGCAGCTTCTAGCGAAACAGGTGAAAACTTTCCCCTCAGCCGCGGCCGCTGCAGCAGCAGCTAACTTGGCAGCTGCTGCCAGCCTTACCCCTGCACCTCCTCCACCGCCTGCTGCTCTACAACCAATCCACATACAGCAACCTGCTGTGTCTGCAACTTCAGCCACATCAATTACAACAGTGCAACATGCCATACTGCAGCACCATGCAGCTGCCACGGCAATGGGCATCCACCCTCACACGCCACACCACGCCCATCCCGCTCATGCTCAGCTCGCCCAAGTACACCATATACCCCAACATCATCTCACCCCTATTTCTTTGTCACCTTTGGGCCATACATTAGGCCACACTTTAGGCCACTCATTAGGGCACACTGGCCTGATCCCAGCCCACCCTTCTGCCTTTCTCCCTGGGCAGCCAATCCACATAATCCCAGCATCTGCGCTCCACCATGCCCCATTAGCTTTGCATCATGTCCCCCATGCAGCCCTTTACCCTACTCTCTTTGCACCACGGCCAGCCAccgcagctgcagcagcagctctgcagCTCCACCCTCTTCTTCACCCCATTTTCTCAGGGCAAGACCTTCAGCACCCTCCTAACCACGGCTCTTGAGATGAAGCCTGTTCTTTCTCTACAAAGAGTTTGAAGCTCTTCTCTAAGGAGTGTGAGAGGTAGCCTTGCTTCTGGGCCCTCTTTTCATCAATGGTTGCCTCTCAAATGTAACATCAGTTGGGCAGGTAAAAGgacaatataaaaacaattagAGGAAATACTGGCTtcttattaatgaaaaaaaaatgggggaaaaaaagtacaagtttaaaaaaaaaagttatgacgGAGAAAAGCTATGTGACAAACGCTCCCAGAAAACTCAGTTTCCTAACAATTATGAATTTGAGAATTTGTTACAAAATCCTCTTTGCAGCTCTTAAGCCCACCACTggattattttttgtaatagtCTGTTAAACTATATATTATTCTTGGTCTTATTTTAACCCTGCAGCCAAAGAGACTTTCTGTTTTCAGTAATGGTGCAGGCATATAATCAAGAATTATTGTAAACATATATTCTTCTCCAAGTGAAGAACcaaaacaagaacaggaattatGTGAGAGGGAGTGAAGCCATATTTCATACCTAATGCAACTTTAAATGGTTTGTGATCAATCAaggatgaaaatgaagaaaaccgAACACAACTGAGGCTCTTAACAAAACCTTGatgtcagaagatgttgatgtTCGTTCTGTTACACTGTCTTGGGTTGCCCCTATGCTCTGATGGACCTAGGTTGCACTGAAAAATGGACATCAAGATGCTGCTTTTGCATCATGTAAGAACTGTATGATTGTAGTATTCtgcaataattttattttttatttgattttaaattattttccagttttttGAGCTTTCCCTTGTGTAATTAATTCTTTGTAAATAGTTATCATAAAGTATTGTAAAATAAGACGCCTTTGTAACTGTTTAAaattagtacaaaaaaaatgaataaaaaaaaaaccctaaacaaAGAGGGCAGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243455 lncRNA downstream 187021 4828253 ~ 4828546 (-) True G205558
TU243437 lncRNA downstream 244723 4766737 ~ 4770844 (-) True G205541
TU243349 lncRNA downstream 314604 4699200 ~ 4700963 (-) True G205488
TU243345 lncRNA downstream 455145 4553297 ~ 4560422 (-) True G205484
TU243342 lncRNA downstream 463699 4549561 ~ 4551868 (-) True G205481
TU243527 lncRNA upstream 17049 5056910 ~ 5057116 (-) True G205628
TU243533 lncRNA upstream 49475 5089336 ~ 5091922 (-) True G205633
TU243534 lncRNA upstream 49475 5089336 ~ 5091922 (-) False G205633
TU243538 lncRNA upstream 49475 5089336 ~ 5091922 (-) False G205633
TU243539 lncRNA upstream 49475 5089336 ~ 5091922 (-) False G205633
XM_026916469.2 mRNA downstream 49941 4952096 ~ 4965626 (-) True arf2a
XM_034310029.1 mRNA downstream 91385 4773679 ~ 4924182 (-) True si:ch211-278a6.1
XM_026916072.2 mRNA upstream 41727 5081588 ~ 5087023 (-) True baxa
XM_026916724.2 mRNA upstream 617976 5657837 ~ 5691272 (-) True mpp3a
XM_026916725.2 mRNA upstream 617976 5657837 ~ 5691272 (-) False mpp3a
XM_034309903.1 mRNA upstream 658226 5698087 ~ 5730023 (-) False si:ch211-198m17.1
XM_026916299.2 mRNA upstream 659154 5699015 ~ 5730022 (-) False si:ch211-198m17.1
XR_004579368.1 other downstream 280681 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 280762 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 897924 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 970992 4040481 ~ 4044575 (-) True G205173
XR_004579378.1 other downstream 1601800 3399745 ~ 3413767 (-) False nde1
TU243535 other upstream 49475 5089336 ~ 5091922 (-) False G205633
TU244177 other upstream 714906 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 801276 5841137 ~ 5841477 (-) True G206282
XR_004579400.1 other upstream 901001 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 913872 5953733 ~ 5961050 (-) False LOC113528542

Expression Profile