RNA id: XM_026916114.2


Basic Information

Item Value
RNA id XM_026916114.2
length 1401
RNA type mRNA
GC content 0.44
exon number 6
gene id antkmt
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13696613 ~ 13702527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCAGCTTGTGCACGAATGTGTCTTATTGCATAGAGCTGTATATCAGTATACAGTCAACTTTAGGAGTTTTCTAGGCACAGAATCTTCAAACTTTACTGAAAAAGATTTTCTGAGGTCAATTCCTGTGACTGTAATTCTATCTGGGTGGAGGCTTAATGCATGGAGGATGAAACACAGGAAGAAATCCTCGGGCAATTTAAAGAAAAGCGGCTCGGGGGATGGGGTCTGTTACAGCTGACGGCGGGGACAGGACTGGCCGTCTATGCCATGTGGGCAGGGATTCTGATGCCTGGGTTTCGCAGAGTGCCTCTGAAACTACAGgTGCCTTATATACCAGCCAGTAAACGACAAGTGTGTAACGTTATGACTCTGCTGAAGGGCCGCTCTGGGAATCTTGCTGACTTGGGCTCAGGAGACGGTAGGATTgtCTTAGAAGCAAGCCGACTGGGTTTCTCTCCTGCTGTAGGCTATGAGTTGAACCCGTGGCTCCTCCGACTCGCAAGATTTCATGCTTGGAGAACCGGCCATTATGGGAAAGTCTCTTACAAGAGGGAAGACCTGTGGAAGGTGAATCTTTCAGGCTATGAGAATATCACAGTGTTCTTGGCTCCAAGTGTGCTCACACTTTTGCAGAAGAAGTTACTAGCTGAGCTCCCTGAAGATGCCATGATTGTTGCTGGACGCTTTCCCTTCCCTGATTGGACGCCATGCAGGATAGAAGGAGACGGTGTGGACAGAGCCTGGGCCTACCATGTACAAGCGCTCAGAAAACACCATCTGTCTTCAAAGGACAGCAAGTCAACCGAGCAAACCAGCTGATCCAGGGGTCATGtgacttattttttaaaaaaaacattttagagaacAAAATGGGACTTTCCAGCCCTACTCTTTTAGTGATTTTATGATGGTTTTACTAGACAGTTTTATTGCTGCAGAAGGAATGTGTTGTATACTGATGtaactttcactttcactattGCATACTGTTCACACATGCTTGTACTACTATTGTATTTAGAGTTTAGGATGATGCAGGATACCAAACACACTTGTTGATCttctggtcatgtgacttggTGGTATCTGTAGCCACACTCAATGGCCGGTTTATTATGTACTCCTAAATTATGATAATGCCTACTTCCCTTTTAGCAGCACCACACACTAAaatgtcacttcctgtcagtgtctactttatgcaaattacatCTGGCCAGCAATAGTATTATGGTGGTCAGTGACCACTGGTAGTTGGTGTACAGGAGGGCTAACGAGAGATACTATAGAGAGGCTATAATCAATGTGCACCTATATAACGATGTGCCTGATAAAATGAACAGTGAATGTATGTATAAGCTAAGCAGATCTAATAAAGTAGCCACTGAGTGTATAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249813 lncRNA downstream 32816 13663416 ~ 13663797 (-) True G210871
TU249798 lncRNA downstream 35799 13628793 ~ 13660814 (-) True G210858
TU249797 lncRNA downstream 35799 13655034 ~ 13660814 (-) False G210858
TU249799 lncRNA downstream 58776 13591439 ~ 13637837 (-) False G210858
TU249602 lncRNA downstream 171033 13525381 ~ 13525580 (-) True G210690
TU249833 lncRNA upstream 23556 13723551 ~ 13726829 (-) True G210886
TU249837 lncRNA upstream 32424 13732419 ~ 13786511 (-) True G210888
XR_003402896.2 lncRNA upstream 40074 13740069 ~ 13747987 (-) False LOC113527951
TU249804 lncRNA upstream 40081 13740076 ~ 13747999 (-) True LOC113527951
TU249820 lncRNA upstream 58531 13758526 ~ 13824293 (-) True G210877
XM_026916672.2 mRNA downstream 1354 13670909 ~ 13695259 (-) True xpo6
XM_026916077.2 mRNA downstream 27122 13662163 ~ 13669491 (-) True nme4
XM_026916843.2 mRNA downstream 198450 13494986 ~ 13498163 (-) True gadd45gip1
XM_026917009.2 mRNA downstream 261257 13432227 ~ 13435356 (-) True swsap1
XM_026916221.2 mRNA downstream 301156 13390616 ~ 13395457 (-) True elof1
XM_026917037.2 mRNA upstream 14405 13714400 ~ 13715455 (-) True LOC113528466
XM_026916044.2 mRNA upstream 63900 13763895 ~ 13809443 (-) True LOC113527894
XM_026915996.2 mRNA upstream 115731 13815726 ~ 13833885 (-) False zgc:112183
XM_026915995.2 mRNA upstream 115731 13815726 ~ 13833051 (-) True zgc:112183
XM_026917231.2 mRNA upstream 141171 13841166 ~ 13871131 (-) True xylt2
XR_004579330.1 other downstream 297388 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 870074 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 1137400 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 304174 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 320253 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 787826 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 820282 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 978755 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile