RNA id: XM_034310078.1


Basic Information

Item Value
RNA id XM_034310078.1
length 3282
RNA type mRNA
GC content 0.49
exon number 25
gene id cfap70
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16779776 ~ 16808650 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGTCTAACATCTCGCGAGAGCAGGTAGCGTTACTATGGAAACACTGAGACGCCTCGAGACACGGTTGTTGTAGAAGTAAGGAAAAAGATCAACTTTGGGGGCTTGTTTTTAGCTGCTCTTTCACCATGGATCAGGGAGCGACTGGTGTAGCAGTGCAGATGACTGTATTACGAGGAGAAAATTTGAGAGGTAACAGAAAGCCCTTTGTCAGCTTTGTGCGAGCTGAATTTAACGGCGTGCTGCTGGGAGACTCACACAAGCTGCATGTGTCTGTGGAAGAGGCTGTGAACTACAACTTCACCTGTGGCTTTGAATGCTCAGAAGTGACCCACACCCTGGATGATCTGGCCCATAAACCTGTCATATTAACACTGATTGAGATCTTCccgaaagaagaaaaacaaaaagaggagAAGACTTCTGTCTTGGGCCAGGCTGTTGTGGATCTGCTCCCTCTGTTGCATGGGCAGTGTAGCTTCTCCTCCACTGTGGTGCTTCACCCTACACAAGGATCACCCATTGACACTGTCTCACAGGACACAGGAATTAAGCCAACACTGGAAGTGACAGTCAGTGCACCAGAGCCGTTGCTCTCAGACACCAGGCTCTCTGAGTCTAATCTGTTCACAGTCACAGTGGAGACAGCCTACTCTGTGCCTGAGGTCTGGAACGCTGCTGCTGGGCCCCAACAGAGTTATGTAGCTGCTCTGCAAGTCCCCCTAACATCACAAAAGAAAGAGCAGGTATTGTTGTTCTCCAATGGCATATTAAAAATGGGCGGTGAAAGGGAGCCAGTGCCTAGAGGCAAAAAATGGCCCCTCGGTTCATTCCTCGCCCCAGACGCCCAGTTCATCCCAGGCATCTCCATTGTCGACGAGCCTGTTAATCTGGAGCATAGTGACCTTAATACTATTGAGGATGAGGTATTCCGAGCCGAAGCTGAGTGTAACAGAAAAAGAGTGAGCTGGGATACAGCACGCCGCTGTTTTATAGATGCAGGAGGAGCTACATGTCTGTCCCGCAGAATTGTCGAATGCAGGCTGTGGCCAGTGGAAGTTATGAGATGTACACAGTTTGGATCTTTCAaagcaggaggaggaaaagTAGGCAAAGAAAAACCTcAAATGGAGGATGAGATTCAGATTTCTTTCCATGGAGTGGCCTATGTCGACTTTGCACCTTTGCTGTACCCTGGGGCCAGGCGTATCCGCGGGATGTACAGAATCCACCCATTCTCTGACTCTGACCTCCTAATGAAGGCAAAAGCAGCCCAGGCAGAGAGTGTGATGGATGCTGAACTGCAAGTGAATGCAGAAGCTCAGATGTATGCAGATTCAAGATCATacattattattgaaattgCCTTGGAAAAACCGCTGGTTCCAAAAAGACAGCCAGAGGAGTTAGCAAGACGAGTGAGGGAACTGATTCCTCCCAGGCCTCCACGACCACGACATTCAGCAGGagcagagaaaGCTGTGCAGGAGTACCAGGCACAGATAATGAGCGTAGTGGCACAGGTGTTGCAGCAGTATGAGCAGATGTTTGGATCTGCGTTTGTTCCTGGTGCCAAGCCTCTGGATCCTGCCACCCAAGAGCAGCGCAAAACCCAGTTGTTCGGAGAGCTGAACTGCTCTGGGAAATACTTCGCCTTTAAGGAACAAATGAAATACTCAGTAGTGCGAATTGTGCGTGAGAAGATGCTGAGGACGGAGGCTTTCACCAACCCAGAGCAGCTGCAGGCTTTCCTGAGTCAACTCTACATCTTCCTGGTGGACGAGATGCATGTTGCACTTAATAAGACCTTATCAGCTGAAGAACAAGAGTTCCCGGCTCAGCCCTTGCTGGACTGCAGTCAGCTCAGGCACTTTGCCAAAGAGGCCCAGCTAAATGAGGATTATCAACTAGCTGCCCACTATTACCAAGAGCAGCTGGCTCAAGATCGGAGCAATCCATCCCACTGGTTTGATTATGGCGTGCTTTCCATGTTTACTGCTGAATATATGAAGGCTGAGGAGTGTTTCCATCTGGCCGTGTCTGTTGACCAAGCACACGTACCCAGCTTACTTATGTGTGGGATTCTGTCAGAAATGAACGGTCATTATGAGGAAGCAGAGACCTTTTTCGAGAGGGCCACATGTATCAAATCGAGCTCCATGGTCCCCTGGACCTTATTTGGCTTGTTTTACTTGGCCCAGGAGAACTTCATCCAAGCAGAAATGGCGTTCATGGAAGCAACTAAGCAGCTGAGAGCAGCCCTGGTGTGTAGCAGCCCAGAACAAACAGCAGAGACTGTGTGTGACAATCACACTCATTCAGAGGATACTGAGCCAGTGGACAAACCAGCTGTGGAAGAACTCACTGAGGGTGAGACAAAAGGACAGGACAAACCTCAGAGCAGTCAGGAAATTAGAGCAGGAGAGGGTGACAAAACAAGAGCTGATCCTGCACAAACCTTCCCTCCAGACCAGCAGTCTCCCACAAGAGTTGGCACCAGCATCTACATGGAGACGGTGAAGTTTCTACTACAGAGTTACGCATTACAGATGGCTCAGAGGGCTTTGGCTCAGGAGTTGTTGTGTCCAGATGGAGGGCCAAGCAGCTCGTATCATTTGGCTCTGGCCCAAGTACAGCTGCTGAGAGGGGAGTACAGCAGTGCCGAGGCAAGTCTGCAGCAGTCCCTCAGTGAAAGCTATCAGAACCCTGATGTGTGGGCTCTGTATGGTCACGTGTACTACATGATGAAGGATTACAATCAAGCTCAAGAGTCTTATGAGAGAACGCTGGACTTTGTGACAGACGCTTCGGACACACATCCTGTTTACCTGCGTCTGGGCTCCATCTACTTACAGAAAGGACAGTATGATAAAGCAAAGCCCACATACATGCATGCCTGCAAGAGTTCTCCCTCCTGTCTCACCTGGCTCGGGCTGGGGATTGCCTGCTACAGGTTGGGGGAGTTGACTGAGGCTGAGGACGCTCTGACTGAAGCAAACGCCCTCGATAACAGGAACCCTGAGGTCTGGGGCTACCTGTCACTGATTTGTTTACAGACTAGAAGGAAACTTGAAGCAGAGCAGTCATACAAGTACGCTGTAAAGTTCAATGCATCAGAGGCGCTGCTGCAGGAGATTACAGATGTGCAGACACGAGTAGGATTTGGAAATCCATGTTTTTGATAGCACTTGTAAAGTGTACACATataaaaaaccttttaaacaGATGTGTTCAGGTATTCTGTGTATTAAAGAAGTAATAAAACATCATTACCTTGTCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251563 lncRNA upstream 9648 16769928 ~ 16770128 (+) True G212412
TU251395 lncRNA upstream 14684 16761152 ~ 16765092 (+) True G212258
TU251394 lncRNA upstream 14684 16761214 ~ 16765092 (+) False G212258
TU251321 lncRNA upstream 83986 16676463 ~ 16695790 (+) True G212201
TU251594 lncRNA downstream 1661 16810311 ~ 16810750 (+) True G212441
TU251601 lncRNA downstream 34298 16842948 ~ 16914573 (+) True G212445
TU251602 lncRNA downstream 61108 16869758 ~ 16927982 (+) True G212446
TU251605 lncRNA downstream 115155 16923805 ~ 16927369 (+) True G212449
TU251703 lncRNA downstream 243728 17052378 ~ 17055807 (+) True G212541
XM_026916132.2 mRNA upstream 229862 16545642 ~ 16549914 (+) False LOC113527936
XM_034309870.1 mRNA downstream 225 16808875 ~ 16819268 (+) False hmox2b
XM_026916254.2 mRNA downstream 463 16809113 ~ 16819268 (+) True hmox2b
XM_034309795.1 mRNA downstream 23753 16832403 ~ 16971767 (+) False LOC113528175
XM_034309794.1 mRNA downstream 23753 16832403 ~ 16963949 (+) True LOC113528175
XM_026917291.2 mRNA downstream 158391 16967041 ~ 16971767 (+) False LOC113528175
TU251142 other upstream 634392 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 811017 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 966445 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3286926 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4591187 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 278641 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1375369 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 2106076 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 2106076 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2335424 19144074 ~ 19145240 (+) True G213491

Expression Profile